View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_high_27 (Length: 378)
Name: NF17635_high_27
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 43 - 354
Target Start/End: Original strand, 37661811 - 37662122
Alignment:
| Q |
43 |
cagagggaccatggttcaacatttctaactaaagatggttcaggtgaaacatcatagtttgctgcagagaacacaactgttacaccttgttggattgcat |
142 |
Q |
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| T |
37661811 |
cagagggaccatggttcaacatttctaactaaagatggttcaggtgaaacttcatagtttgctgcagagaacacaactgttacaccttgttggattgcat |
37661910 |
T |
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| Q |
143 |
gaaatgaaccaatacttgaaccatctttcaacaaaggcacaacaagtacaattatataactggcacatatatgatccataaatcaaagaaacttgtgttt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37661911 |
gaaatgaaccaatacttgaaccatctttcaacaaaggcacaacaagtacaattatataactggcacatatatgatccataaatcaaagaaacttgtgttt |
37662010 |
T |
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| Q |
243 |
ttcactatttaccctatctaggtgattcacgctcaaaattatctgctgaatttaatggtccatgttcttgttctagaccttctggcttctaggtagtaac |
342 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37662011 |
ttcactatttaccctatctaggtgattcacactcaaaattatctgctgaatttaatggtccatgttcttgttctagaccttctggcttctagatagtaac |
37662110 |
T |
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| Q |
343 |
aaacatcgaatt |
354 |
Q |
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| T |
37662111 |
aagcatcgaatt |
37662122 |
T |
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