View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17635_high_28 (Length: 367)

Name: NF17635_high_28
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17635_high_28
NF17635_high_28
[»] chr6 (6 HSPs)
chr6 (113-253)||(30392445-30392585)
chr6 (20-73)||(30392655-30392708)
chr6 (307-357)||(30388536-30388586)
chr6 (194-243)||(30388653-30388702)
chr6 (113-195)||(30389022-30389103)
chr6 (318-359)||(30392396-30392437)
[»] chr4 (1 HSPs)
chr4 (286-339)||(29087817-29087871)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 30392585 - 30392445
Alignment:
Q  113 atctttactaaaaattaaacaagaaccaaaaaatcgattctacaaggaaaatcttgcaaaagaaatggagctcataatatctagtaatgaatcattcaca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30392585 atctttactaaaaattaaacaagaaccaaaaaatcgattctacatggaaaatcttgcaaaagaaatggagctcataatatctagtaatgaatcattcaca 30392486  T
Q  213 ataaccaactcacgataatggacgtacctcccacctcacaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30392485 ataaccaactcacgataatggacgtacctcccacctcacaa 30392445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 30392708 - 30392655
Alignment:
Q  20 atgttcatgttatcttttgtgcgttgtgagactttttaacacagctctcacgac 73  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  30392708 atgttcatgttatcttttgtgtgttgtgagactttttaacacagttctcacgac 30392655  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 30388586 - 30388536
Alignment:
Q  307 aactcctccatttttatgaaaagtactcaattttctctttattcttctctc 357  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  30388586 aactcctccatttttatgaaaagtactcaattttctctttatccttgtctc 30388536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 30388702 - 30388653
Alignment:
Q  194 tagtaatgaatcattcacaataaccaactcacgataatggacgtacctcc 243  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||    
T  30388702 tagtaatgaatcattcacaataaccaactcaaaataatggacgtacctcc 30388653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 30389103 - 30389022
Alignment:
Q  113 atctttactaaaaattaaacaagaaccaaaaaatcgattctacaaggaaaatcttgcaaaagaaatggagctcataatatcta 195  Q
    |||||||||  |||||||||||| ||| ||||||  |||||||| |||||| ||||||| |||||||||||| ||||||||||    
T  30389103 atctttactcgaaattaaacaaggacctaaaaata-attctacatggaaaaacttgcaagagaaatggagctaataatatcta 30389022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 30392437 - 30392396
Alignment:
Q  318 ttttatgaaaagtactcaattttctctttattcttctctctc 359  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  30392437 ttttatgaaaagtactcaattttctctttattcttgtctctc 30392396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 29087871 - 29087817
Alignment:
Q  286 atggaattcttggcgtgatctaactcct-ccatttttatgaaaagtactcaattt 339  Q
    |||||||||||||||| | ||||||||| |||||| |||||||||| ||||||||    
T  29087871 atggaattcttggcgtaaactaactcctcccatttatatgaaaagtgctcaattt 29087817  T

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