View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_high_38 (Length: 296)
Name: NF17635_high_38
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 3881860 - 3882126
Alignment:
| Q |
13 |
aatatgtgcacctattctcaatcagaagagcagaaagaggaatatgacagcacccgtagcatctagagaatgtgtcccggtaggtttgcataaagacaga |
112 |
Q |
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| T |
3881860 |
aatatgtgcacctattctcaatcagaagagcagaaagaggaatatgacagcacccgtagcatctagagaatgtgtcccggtaggtttgcataaagacaga |
3881959 |
T |
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| Q |
113 |
agaaccctcctgttatcttctcactccaacttgcaatgaataattccattaccattcgtgttaattcatttttatttttattctgtgaattggattcctg |
212 |
Q |
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| T |
3881960 |
agaaccctcctgttatcttctcactccaacttgcaatgaataattccattaccattcgtgttaattcatttttatttttattctgtgaattggattcctg |
3882059 |
T |
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| Q |
213 |
tcttctaatctttgttctctccaatggaatacaaactataggactgtgtggatccagcagatggaaa |
279 |
Q |
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| T |
3882060 |
tcttctaatctttgttctctccaatggaatacaaactataggactgtgtggatccagcagatggaaa |
3882126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 3880900 - 3880985
Alignment:
| Q |
13 |
aatatgtgcacctattctcaatcagaagagcagaaagaggaatatgacagcacccgtagcatctagagaatgtgtcccggtaggtt |
98 |
Q |
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| T |
3880900 |
aatatgtatacctattctcaatcaggagagaagaaagagaaagataacagcacccgtagcacctagagaatgtgtcccagtaggtt |
3880985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 3881262 - 3881336
Alignment:
| Q |
24 |
ctattctcaatcagaagagcagaaagaggaatatgacagcacccgtagcatctagagaatgtgtcccggtaggtt |
98 |
Q |
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| T |
3881262 |
ctattctcaaccagaagagcagaaagagaaagataataccacccgtagtacctggagaatgtgtcccggtaggtt |
3881336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 30342173 - 30342392
Alignment:
| Q |
56 |
atgacagcacccgtagcatctagagaatgtgtcccggtaggtttgcataaagacagaagaaccctcctgttatcttctcactccaacttgcaatgaataa |
155 |
Q |
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| T |
30342173 |
atgacagcacccgtagcacctagagaatgtgtcctggtaggtttgcataaagacctt-gaaccct---gatatcttctcactccaacttgcaatgaataa |
30342268 |
T |
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| Q |
156 |
ttccattaccattcgtgttaattcatttttatttttattctgtgaattggattcctgtcttctaatctttgttctctccaatggaatacaaactatagga |
255 |
Q |
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| T |
30342269 |
ttccattaccattcgtattaattcatttttctttttattttgtgaattggatccatgtcttctaatctttgttctctccaatggaaaacaaactatagga |
30342368 |
T |
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| Q |
256 |
ctgtgtggatccagcagatggaaa |
279 |
Q |
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| T |
30342369 |
atgtgtggatgcagcagatggaaa |
30342392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 56 - 279
Target Start/End: Complemental strand, 18987592 - 18987373
Alignment:
| Q |
56 |
atgacagcacccgtagcatctagagaatgtgtcccggtaggtttgcataaagacagaagaaccctcctgttatcttctcactccaacttgcaatgaataa |
155 |
Q |
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|||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||| |
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| T |
18987592 |
atgatagcacccgtagcacctagagaatgtgtcctggtaggtttgcataaagacctt-gaaccct---gatatcttctcactctaacttgcaatgaataa |
18987497 |
T |
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| Q |
156 |
ttccattaccattcgtgttaattcatttttatttttattctgtgaattggattcctgtcttctaatctttgttctctccaatggaatacaaactatagga |
255 |
Q |
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| T |
18987496 |
ttccaataccattcgtattaattcatttttctttttattttgtgaattggatccctgtcttctaatctttgttctctccaatcgaatacaaactatagga |
18987397 |
T |
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| Q |
256 |
ctgtgtggatccagcagatggaaa |
279 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
18987396 |
atgtgtggatgcagcagatggaaa |
18987373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 12287201 - 12287132
Alignment:
| Q |
196 |
tgtgaattggattcctgtcttctaatctttgttctctccaatggaatacaaactataggactgtgtggat |
265 |
Q |
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| T |
12287201 |
tgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactacaggactgtgtggat |
12287132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 32091984 - 32092050
Alignment:
| Q |
196 |
tgtgaattggattcctgtcttctaatctttgttctctccaatggaatacaaactataggactgtgtg |
262 |
Q |
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| T |
32091984 |
tgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactataggactatgtg |
32092050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 23917931 - 23918150
Alignment:
| Q |
56 |
atgacagcacccgtagcatctagagaatgtgtcccggtaggtttgcataaagacagaagaaccctcctgttatcttctcactccaacttgcaatgaataa |
155 |
Q |
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|||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||| |
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| T |
23917931 |
atgaaagcacccgtagcacctagagaatgtgtcctggtaggtttgcataaagacctt-gaaccct---gatatcttctcactctaacttgcaatgaataa |
23918026 |
T |
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| Q |
156 |
ttccattaccattcgtgttaattcatttttatttttattctgtgaattggattcctgtcttctaatctttgttctctccaatggaatacaaactatagga |
255 |
Q |
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| T |
23918027 |
ttccaataccattcgtattaattcatttttctttttattttgtgaattggatccctgtcttctaatctttgttctctccaatcgaatacaaactatagga |
23918126 |
T |
|
| Q |
256 |
ctgtgtggatccagcagatggaaa |
279 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
23918127 |
atgtgtggatgcagcagatggaaa |
23918150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 2269204 - 2269274
Alignment:
| Q |
196 |
tgtgaattggattcctgtcttctaatctttgttctctccaatggaatacaaacta-taggactgtgtggat |
265 |
Q |
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|||||||| |||||| |||| ||||||||||||| ||||||| || |||||||| |||||||||||||| |
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| T |
2269204 |
tgtgaattatattcctatcttttaatctttgttctttccaatgaaacacaaactacaaggactgtgtggat |
2269274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 9391970 - 9391901
Alignment:
| Q |
196 |
tgtgaattggattcctgtcttctaatctttgttctctccaatggaatacaaactataggactgtgtggat |
265 |
Q |
| |
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|||||||| ||||||| | || |||| |||||||| || ||||||| |||||||| | |||||||||||| |
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| T |
9391970 |
tgtgaattagattcctattttttaatttttgttctttctaatggaacacaaactacaagactgtgtggat |
9391901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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