View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_high_4 (Length: 589)
Name: NF17635_high_4
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 485832 - 485385
Alignment:
| Q |
1 |
tttggtggtggtgataatgttgtcggtgttgtttctggttgagtttagggtagggtttggaggagacannnnnnnnnaggctagggtttctaattgagaa |
100 |
Q |
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| T |
485832 |
tttggtggtggtgataatgttgtcggtgttgtttctggttgagtttagggtagggtttggaggagacatttttttt-aggctagggtttctaattgagaa |
485734 |
T |
|
| Q |
101 |
tgagaaagttggaatggtgtatgtgta-tgttaacgtgagagaagaaaggtgctagtgtttgtatatatatagaattttgtggtgagtgagagagtgtaa |
199 |
Q |
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| T |
485733 |
tgagaaagttggaatgatggatgtgtaatgttaacgtgagagaagaaaggtgctagtgtttgtgtatatatagaattttgtggtgagtgagagagtgtaa |
485634 |
T |
|
| Q |
200 |
tacttgtgagaatattgaatgagaaaataatgggatttcgtgtgctaaaaatgtgctatgaatgaatatgaggatatttgatttggtatgtttttgaata |
299 |
Q |
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| T |
485633 |
tacttgtgagaatattgaatgagaaaataatgggatttcgtgtgctaaaaatgtgctatgaatgaatatgaggatatttgatttggtatgtttttgaata |
485534 |
T |
|
| Q |
300 |
tttgatgaaatgaattaaaacttgcttgttttgttatgtgatatggttttgatgatggttcaataaggcaagaatttatgtgtatttatagagatgtgaa |
399 |
Q |
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| T |
485533 |
tttgatgaaatgaattaaaacttgcttgttttgttatgtgatatggtttggatgatggatcaataaggcaagaatttatgtgtatttatagagatgtgaa |
485434 |
T |
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| Q |
400 |
tgtgatttgtcatgca---taatgggaccaaaggaaggtgtggcgaagg |
445 |
Q |
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| T |
485433 |
tgtgatttgtcatgcataataatgggaccaaaggaaggtgtggcgaagg |
485385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 562
Target Start/End: Complemental strand, 485297 - 485268
Alignment:
| Q |
533 |
ggctcatttaaaaatattttgatgcattcc |
562 |
Q |
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| T |
485297 |
ggctcatttaaaaatattttgatgcattcc |
485268 |
T |
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