View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_high_44 (Length: 284)
Name: NF17635_high_44
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 47968132 - 47967875
Alignment:
| Q |
18 |
atgtacaccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctgnnnnnnnnnnnnnnnna---atggttagttttatg |
114 |
Q |
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| T |
47968132 |
atgtacaccatagattgggatgttgattgtgtgggttttcaaatgtttcgattttaaaatttctgttttttgattttttttttttatggttagttttatg |
47968033 |
T |
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| Q |
115 |
acaatgtttatttaaatacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47968032 |
acaatgtttatttaaatacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagttt |
47967933 |
T |
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| Q |
215 |
gtctgtgaagaagtttgtcttatccgacccaaaatccagtttctgtagctcctccctt |
272 |
Q |
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| T |
47967932 |
gtctgtgaagaagtttgtcttatccgacccaaaatccagtttctgtagctcctccctt |
47967875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 132 - 272
Target Start/End: Original strand, 37338096 - 37338236
Alignment:
| Q |
132 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttg |
231 |
Q |
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| T |
37338096 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttataaatttagtttcagatttctgtggaaaagtttgtctgcgaagaagtttg |
37338195 |
T |
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| Q |
232 |
tcttatccgacccaaaatccagtttctgtagctcctccctt |
272 |
Q |
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| T |
37338196 |
tcttatctgacccaaagtccagtttctgtagctccttcctt |
37338236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 132 - 272
Target Start/End: Complemental strand, 11300076 - 11299941
Alignment:
| Q |
132 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttg |
231 |
Q |
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| T |
11300076 |
acgtaatggtcacgtgtacatggtttccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagtttgtctttgaagaagtttg |
11299977 |
T |
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| Q |
232 |
tcttatccgacccaaaatccagtttctgtagctcctccctt |
272 |
Q |
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| T |
11299976 |
tct-----gacccaaaatccagtttttgtagctcctccctt |
11299941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 11300218 - 11300156
Alignment:
| Q |
20 |
gtacaccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg |
82 |
Q |
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| T |
11300218 |
gtacaccatagattgcgaagttgattgtgtgggttttcagatgtttcgattttaaaatttctg |
11300156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 37337954 - 37338016
Alignment:
| Q |
20 |
gtacaccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg |
82 |
Q |
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| T |
37337954 |
gtacaccatagattgtgaagttgattgtgtgggttttcagatgttttgattttaaattttctg |
37338016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 15296926 - 15297012
Alignment:
| Q |
132 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtct |
218 |
Q |
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| T |
15296926 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagattcagatttctgtggagaagtttgtct |
15297012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 15296784 - 15296846
Alignment:
| Q |
20 |
gtacaccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg |
82 |
Q |
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| T |
15296784 |
gtacaccatagattgcgaagttgattgtctgggttttcagatgtttcgattttaaaatttctg |
15296846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 15297001 - 15297050
Alignment:
| Q |
223 |
agaagtttgtcttatccgacccaaaatccagtttctgtagctcctccctt |
272 |
Q |
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| T |
15297001 |
agaagtttgtcttatctgacccaaagtccagtttctgtagctccttcctt |
15297050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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