View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17635_high_47 (Length: 254)

Name: NF17635_high_47
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17635_high_47
NF17635_high_47
[»] chr5 (3 HSPs)
chr5 (16-254)||(2450608-2450846)
chr5 (26-254)||(2461624-2461846)
chr5 (27-250)||(2445851-2446068)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 2450846 - 2450608
Alignment:
Q  16 ctcgcgaatggtagcaactgtttcttcagcatctttaactatcctttcttcatagataattgagtcattattggctgttttcagcttaaattcagcaaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2450846 ctcgcgaatggtagcaactgtttcttcagcatctttaactattctttcttcatagataattgagtcatcattggctgttttcagcttaaattcagcaaga 2450747  T
Q  116 aactcgccatcttcagaatctgatattgaattattgctagaagagtctccaacgtcaactttggtgatcttccctgcaatattaggttccactaagaagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2450746 aactcgccatcttcagaatctgatattgaattattgctagaagagtctccaacgtcaactttggtgatcttccctgcaatattaggttccactaagaagt 2450647  T
Q  216 gaataaccactaattgtatgccagggtgttcggccatac 254  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2450646 gaataaccactaattgtatgccagggtgttcggccatac 2450608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 2461846 - 2461624
Alignment:
Q  26 gtagcaactgtttcttcagcatctttaactatcctttcttcatagataattgagtcattattggctgttttcagcttaaattcagcaagaaactcgccat 125  Q
    ||||||||||||||| |||||||||| |||||   ||||||||||||||  ||||||| | | |||||||||||||||||||| ||||| |||||  |||    
T  2461846 gtagcaactgtttctgcagcatcttttactatttcttcttcatagataacagagtcataactagctgttttcagcttaaattctgcaaggaactcatcat 2461747  T
Q  126 cttcagaatctgatattgaattattgctagaagagtctccaacgtcaactttggtgatcttccctgcaatattaggttccactaagaagtgaataaccac 225  Q
    ||||      ||||||||||||| | |||||||||||||||||||||| |||||| ||||  ||  ||||||||||||||||||||||| ||||||||||    
T  2461746 cttc------tgatattgaattactcctagaagagtctccaacgtcaaatttggtaatctgtccaacaatattaggttccactaagaagcgaataaccac 2461653  T
Q  226 taattgtatgccagggtgttcggccatac 254  Q
    |||| ||||||||||||||||||||||||    
T  2461652 taatcgtatgccagggtgttcggccatac 2461624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 250
Target Start/End: Complemental strand, 2446068 - 2445851
Alignment:
Q  27 tagcaactgtttcttcagcatctttaactatcctttcttcatagataattgagtcattattggctgttttcagcttaaattcagcaagaaactcgccatc 126  Q
    |||||||||||||  |||||||||| |||||  | ||||| |||||||  ||||||| | |||||||||||||||||||||| ||||| |||||  ||||    
T  2446068 tagcaactgtttcggcagcatcttttactattttctcttcgtagataacggagtcatcactggctgttttcagcttaaattccgcaaggaactcctcatc 2445969  T
Q  127 ttcagaatctgatattgaattattgctagaagagtctccaacgtcaactttggtgatcttccctgcaatattaggttccactaagaagtgaataaccact 226  Q
           ||||| ||||| |||  | | || |||||||||||||||||  || | |||| ||||  |||| ||| ||||||||||||| |||||| ||||    
T  2445968 ------ctctgagattgatttaccgattgatgagtctccaacgtcaacgctgctaatctcccctaaaatagtagattccactaagaagcgaataatcact 2445875  T
Q  227 aattgtatgccagggtgttcggcc 250  Q
    |||  |||||||||||| ||||||    
T  2445874 aatcttatgccagggtgctcggcc 2445851  T

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