View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_high_5 (Length: 576)
Name: NF17635_high_5
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Complemental strand, 16814706 - 16814226
Alignment:
| Q |
10 |
agcacagacaataacaaccacactaacgatgatcttgggggagcataaccatgcgtgaaacgcatattttgagaaatcaaacctgtaaaagggtattcga |
109 |
Q |
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| T |
16814706 |
agcacatacactaacaaccacactaacaatgatcttgggggaacagaaccatgcgtgaaacgcatattttgagaaatcaaacctgtaaaagggtattcga |
16814607 |
T |
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| Q |
110 |
acacatacatcggcgaatagaataacattttacggcctataacaaccaatgttttaatccacagaaaccagcatcctccaccaagaagaggcagattctg |
209 |
Q |
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| T |
16814606 |
acacatacatcggggaatagaacaacattttacagcctataacaaccaatgttttgatcaacagaaaccagcatccaccaccaagaaaaggcagattctg |
16814507 |
T |
|
| Q |
210 |
gactatgccttcagagaaagaaccgaccctgatgttgaggatggggagcaacatcgggtttataagacaacattggacaaccgccgccatagacgatgtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
16814506 |
gactatgccttcagagaaagaaccgaccctgatgttgaggatggagagcaacaacgggtttataagacaactgtggacgaccgccgccatagacgatgtt |
16814407 |
T |
|
| Q |
310 |
gtaacaacggtttgccatttcggaacgggaaacaaatggtcatcagaaaagagatcaaaccgttgttaaagaacaacaatcaaacaagatgtctctgctg |
409 |
Q |
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||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
16814406 |
gtaacaacggtttgccatttcagaacggggaaaaaatgctcatcagaaaagagatc-aaccgttgttcaagaacaacaatcaaacaagatgtatctgctg |
16814308 |
T |
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| Q |
410 |
acgacggcgcagagttgcaagaacctgacccatactagtttgaccaaccaaacaaaagaccaaagtacatgttctgacaaag |
491 |
Q |
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||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16814307 |
acgacggtgcacagttgtaagaacctgacccatactagtttgaccaaccaaacaaaagaccaaagtacatgttctgacaaag |
16814226 |
T |
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