View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17635_high_54 (Length: 237)
Name: NF17635_high_54
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_54 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 13878786 - 13878906
Alignment:
| Q |
103 |
tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaaaagaaaagttatctatctattacctttggtgctaattaaaactttgta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13878786 |
tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaagtgaaaagttatctatctattacctttggtgctaattaaaactttgta |
13878885 |
T |
|
| Q |
203 |
tgtcctgtcgccaccatatat |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
13878886 |
tgtcctgtcgccaccatatat |
13878906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 13874529 - 13874629
Alignment:
| Q |
1 |
aattactaagaacttcacaagtgtagtgatcacttggtcctgtaaacacaattaacaacg-aaatgaggccattaatcacttgtagtggtaaggaaaaat |
99 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||||| |||| |||||||||||||||||| ||||||||||||| |||||||| || ||||||| |||| |
|
|
| T |
13874529 |
aattaccaagaacttcacaagtgtggcgatcacttagtcccataaacacaattaacaacgaaaatgaggccattgatcacttgacgttgtaaggacaaat |
13874628 |
T |
|
| Q |
100 |
a |
100 |
Q |
| |
|
| |
|
|
| T |
13874629 |
a |
13874629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13884482 - 13884566
Alignment:
| Q |
1 |
aattactaagaacttca-caagtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccattaatcacttgtagtg |
87 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| || |||||||||||||||| ||||||| ||||||||| ||||| |||| |
|
|
| T |
13884482 |
aattaccaagaacttcaacaagtgtagtgatcactt---cccataaacacaattaacaaggaaatgaagccattaattacttgcagtg |
13884566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13872190 - 13872260
Alignment:
| Q |
1 |
aattactaagaacttca-caagtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccatt |
73 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
13872190 |
aattaccaagaacttcaacaagtgtagtgatcactt---cctataaacacaattaacaaggaaatggggccatt |
13872260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12957716 - 12957643
Alignment:
| Q |
1 |
aattactaagaacttcacaa-gtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccattaat |
76 |
Q |
| |
|
|||||| |||||||||| || ||||||| ||||||| || |||||||||||||||| ||||||||||||||||| |
|
|
| T |
12957716 |
aattaccaagaacttcaaaaagtgtagtaatcactt---cccataaacacaattaacaaggaaatgaggccattaat |
12957643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University