View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17635_high_6 (Length: 566)
Name: NF17635_high_6
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 14 - 551
Target Start/End: Complemental strand, 15077022 - 15076485
Alignment:
| Q |
14 |
agtgagatgaaaaattggatcttctttaagttcttcatatttcaaaaataaaactttgtctggcctaatcatactttctttcaagtaacctaaattatgc |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15077022 |
agtgacatgaaaaattggatcttctttaagttcttcatatttcaaaaatataactttgtctggcctaatcatactttctttcaagtaacctaaattatgc |
15076923 |
T |
|
| Q |
114 |
tcccaaaatgaaccaaatggagtaaccccattgcaaaaactttcaaaagtttcctctaagtttaaaaccggtaaagatggatgttttgaccttattttat |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15076922 |
tcccaaaatgaaccaaatggagtaatcccattacaaaaactttcaaaagtttcctctaagcttaaaactggtaaagatggatgttttgaccttattttat |
15076823 |
T |
|
| Q |
214 |
taatgaaaatccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtgaaggaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15076822 |
taatgaaaatccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggagtcttgaattgacttggcaagtgaaggaaa |
15076723 |
T |
|
| Q |
314 |
tggaatgtgagtcccaaaaagccttggttcaattatttttgagagaggaattcggtctttgatatcagcagcataaagattacgttcaatggatggcact |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15076722 |
tggaatgtgagtcccaaaaagccttggttcaattatttttgatagaggaattcggtctttgatatcagcagcataaagattacgttcaatggaaggcact |
15076623 |
T |
|
| Q |
414 |
agttcatgtataatggatttaagtaatggatgattctcaaaagagtattgattgcgatttacaattgtaaatgtaagtgctctcaaccaagttgtgcctg |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
15076622 |
agttcatgtataatggatttaagtaatggatgattctcaaaagagtattgattgcgattaacaattgtaaatgtaaatgctctcaaccaagtggtgcctg |
15076523 |
T |
|
| Q |
514 |
attttggtaagcttgcaacaacaatatcattgtctttg |
551 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
15076522 |
attttggtaagctagcaacaacaatatcattgtgtttg |
15076485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 49 - 522
Target Start/End: Original strand, 15171523 - 15171999
Alignment:
| Q |
49 |
catatttcaaaaataaaactttgtctggcctaatcatactttctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagtaaccccattgca |
148 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15171523 |
catatttcaaaaataaaactttgtctgacctagtcatactttctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagtaaccccattaca |
15171622 |
T |
|
| Q |
149 |
aaaactttcaaaagtttcctctaagtttaaaaccggtaaagatggatgttttgaccttattttattaatgaaaatccaatatgacacaaaagtatcaaat |
248 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
15171623 |
aaaactttcaaaagtttcctctaagcttaaaactgataaagatggatgttttgaccttattttattaacgaaactccaatatgacacaaaagtatcaaat |
15171722 |
T |
|
| Q |
249 |
ggatttctacttatataaacta---tcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatgtgagtcccaaaaagccttggttcaa |
345 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15171723 |
ggatttctacttatataaactactatcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatgtgagtcccaaaaagccttggttcaa |
15171822 |
T |
|
| Q |
346 |
ttatttttgagagaggaattcggtctttgatatcagcagcataaagattacgttcaatggatggcactagttcatgtataatggatttaagtaatggatg |
445 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
15171823 |
ttatttttgatagaggaattcggtctttgatatcagcagcataaagattacgttcaatggaaggcactagtttatgtataatggatttaagtaatgaatg |
15171922 |
T |
|
| Q |
446 |
attctcaaaagagtattgattgcgatttacaattgtaaatgtaagtgctctcaaccaagttgtgcctgattttggta |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15171923 |
attctcaaaagagtattgattgcgatttacaattgtaaatgtaagtgctctcaaccaagttgtgcctgattttggta |
15171999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 229 - 551
Target Start/End: Original strand, 15168868 - 15169190
Alignment:
| Q |
229 |
atgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatgtgagtccc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
15168868 |
atgacacaaaagtatcaaatggatttctacttatataaactatcttacaattagactcttgaatcgacttggcaagtgaagaaaatggaatgtgagtccc |
15168967 |
T |
|
| Q |
329 |
aaaaagccttggttcaattatttttgagagaggaattcggtctttgatatcagcagcataaagattacgttcaatggatggcactagttcatgtataatg |
428 |
Q |
| |
|
||| | ||||||||||||||||||||| | ||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
15168968 |
aaatatccttggttcaattatttttgatataggaatttggtccttcatatcagcagcataaagattacgttcaatggaaggcactagtttatgtataatg |
15169067 |
T |
|
| Q |
429 |
gatttaagtaatggatgattctcaaaagagtattgattgcgatttacaattgtaaatgtaagtgctctcaaccaagttgtgcctgattttggtaagcttg |
528 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15169068 |
gatttaagtaatggatgattctcaaaggagtattgattgcgatttacaattgtaaatgtaagtgctctcaaccaagtggtgcctgattttggtaagcttg |
15169167 |
T |
|
| Q |
529 |
caacaacaatatcattgtctttg |
551 |
Q |
| |
|
|||||||||||||| | |||||| |
|
|
| T |
15169168 |
caacaacaatatcactatctttg |
15169190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 15165121 - 15165349
Alignment:
| Q |
14 |
agtgagatgaaaaattggatcttctttaagttcttcatatttcaaaaataaaactttgtctggcctaatcatactttctttcaagtaacctaaattatgc |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
15165121 |
agtgacatgaaaaattggatcttctttaagttcttcatatttcaaaaataaaattttgtctggactagtcatactttctttcaagtaacctaaagtatgc |
15165220 |
T |
|
| Q |
114 |
tcccaaaatgaaccaaatggagtaaccccattgcaaaaactttcaaaagtttcctctaagtttaaaaccggtaaagatggatgttttgaccttattttat |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
15165221 |
tcccaaaatgaaccaaatggagttaccccattacaaaaactttcaaaagtttcctttaagcttacaatttgtaaagatggatgttttgaccttattttat |
15165320 |
T |
|
| Q |
214 |
taatgaaaatccaatatgacacaaaagta |
242 |
Q |
| |
|
||| |||| |||||||||||||||||||| |
|
|
| T |
15165321 |
taacgaaactccaatatgacacaaaagta |
15165349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 21 - 551
Target Start/End: Original strand, 4506386 - 4506921
Alignment:
| Q |
21 |
tgaaaaattggatcttctttaagttcttcatatttcaaaaataaaactttgtctggcctaatcatactttctttcaagtaacctaaattatgctcccaaa |
120 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||| |||| |||||||| || ||| ||| ||||| ||||||||||| || ||||| ||||||| |
|
|
| T |
4506386 |
tgaaaaattgcattctctttaacatcttcatatttcaagaatagaactttgtgtgatctagccatgctttccttcaagtaacccaacttatgatcccaaa |
4506485 |
T |
|
| Q |
121 |
atgaaccaaatggagtaaccccattgcaaaaactttcaaaagtttcctctaagtttaaaaccggtaaagatggatgttttgaccttattttattaatgaa |
220 |
Q |
| |
|
|||||||||||||| | | ||||| ||| ||||||||||| |||| |||| | ||||| ||||||||| ||| ||||||||||||||||| | |
|
|
| T |
4506486 |
atgaaccaaatggacttatcccatcacaataactttcaaaaatttcatctatgcttaaagttggtaaagattgat---ttgaccttattttattagcata |
4506582 |
T |
|
| Q |
221 |
aatccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatg |
320 |
Q |
| |
|
|| |||| ||||||||||| ||||| |||||||||| |||||||| ||| |||||||||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
4506583 |
aaaccaagcagacacaaaagtgtcaaaaggatttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaatggaaca |
4506682 |
T |
|
| Q |
321 |
tgagtcccaaaaagccttggttcaattatttttgagagaggaattcg--gtct-ttgatatc---agcagcataaagattacgttcaatggatggcacta |
414 |
Q |
| |
|
||||| |||||||||||||||||| | || ||||| || |||| | || | | |||| | || |||||| ||| ||||| | | ||||||| |
|
|
| T |
4506683 |
tgagt-ccaaaaagccttggttcattcatgtttgataggttaatttgaaaactctggctatcactaccaccataaacattgtattcaaagaaaggcacta |
4506781 |
T |
|
| Q |
415 |
gttcatgtataatggatttaagtaatggatgattctcaa---aagagtattgattgcgatttacaattgtaaatgtaagtgctctcaaccaagttgtgcc |
511 |
Q |
| |
|
|||||||| | || |||||||||||||||||| || | ||||| | |||| ||||| ||||| | |||||| |||||| |||||||||||||||| |
|
|
| T |
4506782 |
gttcatgtgaattgaatttaagtaatggatgatcttctaaggaagagaaatgatgacgattaacaatggcaaatgtgagtgctttcaaccaagttgtgcc |
4506881 |
T |
|
| Q |
512 |
tgattttggtaagcttgcaacaacaatatcattgtctttg |
551 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4506882 |
ggattttggtaagctagcaacaacaatatcattgtctttg |
4506921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 216 - 345
Target Start/End: Complemental strand, 15066876 - 15066747
Alignment:
| Q |
216 |
atgaaaatccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtgaaggaaatg |
315 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
15066876 |
atgaaagtccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactcttgaattgacttgggcaacgaaggaaatg |
15066777 |
T |
|
| Q |
316 |
gaatgtgagtcccaaaaagccttggttcaa |
345 |
Q |
| |
|
| |||||||| ||| ||||||||||||||| |
|
|
| T |
15066776 |
gcatgtgagttccataaagccttggttcaa |
15066747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 207 - 344
Target Start/End: Original strand, 15214555 - 15214692
Alignment:
| Q |
207 |
attttattaatgaaaatccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtg |
306 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| ||||||||||| ||||||| |||||||| ||| |||||||||||||||| || |||||||| | | |
|
|
| T |
15214555 |
attttgttgatgaaaatccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactctttaactgacttgggcaacg |
15214654 |
T |
|
| Q |
307 |
aaggaaatggaatgtgagtcccaaaaagccttggttca |
344 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
15214655 |
aaggaaatggcatgtgagttccaaaaagccttggttca |
15214692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 344
Target Start/End: Complemental strand, 15052675 - 15052549
Alignment:
| Q |
218 |
gaaaatccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtgaaggaaatgga |
317 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||| ||||||| |||||||| ||| |||||||||||||||| || |||||||| | ||||||||||| |
|
|
| T |
15052675 |
gaaagtccaatatgatacaaatatatcaaatgggtttctacatatataaattattttacaattggactctttaactgacttgggcaacgaaggaaatggc |
15052576 |
T |
|
| Q |
318 |
atgtgagtcccaaaaagccttggttca |
344 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
15052575 |
atgtgagttccaaaaagccttggttca |
15052549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 223 - 355
Target Start/End: Complemental strand, 13033544 - 13033412
Alignment:
| Q |
223 |
tccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatgtg |
322 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||| |||||||| || |||||| ||||||||| || ||||||| | ||| | ||||||||||| |
|
|
| T |
13033544 |
tccaatatgatacaaatgtatcaaatgggtttctacatatataaatgattttacaactggactctttaaccgacttgggcaacgaaaggaatggaatgtg |
13033445 |
T |
|
| Q |
323 |
agtcccaaaaagccttggttcaattatttttga |
355 |
Q |
| |
|
||| |||||||||||||||||||| || ||||| |
|
|
| T |
13033444 |
agtgccaaaaagccttggttcaatcatatttga |
13033412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 15000279 - 15000171
Alignment:
| Q |
236 |
aaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatgtgagtcccaaaaagc |
335 |
Q |
| |
|
|||||| |||| |||||| |||| |||||||| |||||||||||||| || | |||||||||||| | ||| ||||||||| ||||| |||||||| |
|
|
| T |
15000279 |
aaaagtgtcaagtggattcctacatatataaatgatcttacaattggattccttaattgacttggccaaggaattaaatggaatatgagttccaaaaagt |
15000180 |
T |
|
| Q |
336 |
cttggttca |
344 |
Q |
| |
|
||||||||| |
|
|
| T |
15000179 |
cttggttca |
15000171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 15751292 - 15751169
Alignment:
| Q |
223 |
tccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatgtg |
322 |
Q |
| |
|
||||||||||||| |||| ||||| || || || | ||| |||| ||||||||||||||| || | |||||||| || | |||| ||| |||||||| |
|
|
| T |
15751292 |
tccaatatgacacgtaagtgtcaaaagggttcctgcatatgtaaattatcttacaattggattccttgattgactttgctaaggaagcaaaaggaatgtg |
15751193 |
T |
|
| Q |
323 |
agtcccaaaaagccttggttcaat |
346 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
15751192 |
agttccaaaaagccttggttcaat |
15751169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 207 - 346
Target Start/End: Original strand, 1618179 - 1618318
Alignment:
| Q |
207 |
attttattaatgaaaatccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtg |
306 |
Q |
| |
|
||||| || |||||| ||||||| ||||||||||| |||||||| ||||||| ||| |||| ||||||||||||||| |||| |||||||||||| || | |
|
|
| T |
1618179 |
attttgttcatgaaattccaataagacacaaaagtgtcaaatgggtttctacatatgtaaattatcttacaattggattctttaattgacttggctagag |
1618278 |
T |
|
| Q |
307 |
aaggaaatggaatgtgagtcccaaaaagccttggttcaat |
346 |
Q |
| |
|
||| ||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
1618279 |
aagtaaaaggaatatgagttccaaaaagccttggttcaat |
1618318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 207 - 346
Target Start/End: Original strand, 1626744 - 1626883
Alignment:
| Q |
207 |
attttattaatgaaaatccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggactcttgaattgacttggcaagtg |
306 |
Q |
| |
|
||||| || |||||| ||||||| ||||||||||| |||||||| || |||| ||| |||| |||||||||||||||||||| ||| |||||||| || | |
|
|
| T |
1626744 |
attttgttcatgaaattccaataagacacaaaagtgtcaaatgggttcctacatatgtaaattatcttacaattggactctttaatagacttggctagag |
1626843 |
T |
|
| Q |
307 |
aaggaaatggaatgtgagtcccaaaaagccttggttcaat |
346 |
Q |
| |
|
|| | || ||||||||||| ||||||| |||||||||||| |
|
|
| T |
1626844 |
aatggaaaggaatgtgagttccaaaaatccttggttcaat |
1626883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 3653192 - 3653228
Alignment:
| Q |
498 |
aaccaagttgtgcctgattttggtaagcttgcaacaa |
534 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3653192 |
aaccaagttgtgcctgattttggtacggttgcaacaa |
3653228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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