View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_high_8 (Length: 551)
Name: NF17635_high_8
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_8 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 20 - 538
Target Start/End: Complemental strand, 4246 - 3732
Alignment:
| Q |
20 |
caatagccatttgttttggacttggatgctcagtagcacaagagctggtctctgatgtccgtgtatcaggtttgctagaattctgaccatcagttgcttc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4246 |
caatagccatttgttttggacttggatgctcagtagcacaagagccagtctctgatgtccgtgtatcaggtttgctagaattctgaccatcagttgattc |
4147 |
T |
|
| Q |
120 |
atccttgggaagtgattgtgacacaccagccatcttttttgctttccttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatgg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146 |
atccttgggaagtgattgtgacacaccagccatcttttttgctttctttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatgg |
4047 |
T |
|
| Q |
220 |
taggtagaagcccacaacaaggggttgtccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatc |
319 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4046 |
taggtagaagcccacaacaaggggttttccttctcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatc |
3947 |
T |
|
| Q |
320 |
tgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaccacgaaa |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3946 |
tgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaaa |
3847 |
T |
|
| Q |
420 |
taagtaaaaactataactaacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacag |
519 |
Q |
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| T |
3846 |
taagtaaaaacta----taacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacag |
3751 |
T |
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| Q |
520 |
cactgtcacagattgcttc |
538 |
Q |
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|||||||||||||| |||| |
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| T |
3750 |
cactgtcacagattccttc |
3732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 21447290 - 21447804
Alignment:
| Q |
20 |
caatagccatttgttttggacttggatgctcagtagcacaagagctggtctctgatgtccgtgtatcaggtttgctagaattctgaccatcagttgcttc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21447290 |
caatagccatttgttttggacttggatgctcagtagcacaagagccagtctctgatgtccgtgtatcaggtttgctagaattctgaccatcagttgattc |
21447389 |
T |
|
| Q |
120 |
atccttgggaagtgattgtgacacaccagccatcttttttgctttccttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatgg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447390 |
atccttgggaagtgattgtgacacaccagccatcttttttgctttctttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatgg |
21447489 |
T |
|
| Q |
220 |
taggtagaagcccacaacaaggggttgtccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatc |
319 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447490 |
taggtagaagcccacaacaaggggttttccttctcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatc |
21447589 |
T |
|
| Q |
320 |
tgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaccacgaaa |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21447590 |
tgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaaa |
21447689 |
T |
|
| Q |
420 |
taagtaaaaactataactaacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacag |
519 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447690 |
taagtaaaaacta----taacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacag |
21447785 |
T |
|
| Q |
520 |
cactgtcacagattgcttc |
538 |
Q |
| |
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|||||||||||||| |||| |
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| T |
21447786 |
cactgtcacagattccttc |
21447804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 90 - 346
Target Start/End: Complemental strand, 40685257 - 40685001
Alignment:
| Q |
90 |
tttgctagaattctgaccatcagttgcttcatccttgggaagtgattgtgacacaccagccatcttttttgctttccttttggccttcgcttcagcaaca |
189 |
Q |
| |
|
||||||||| | ||||| |||||| |||||||||| || ||||| ||||| ||||||||||||||||| ||| ||||||| ||||| ||||| |||||| |
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| T |
40685257 |
tttgctagaggtgtgaccttcagttacttcatccttaggtagtgactgtgatacaccagccatctttttcgctctcctttttgcctttgcttctgcaaca |
40685158 |
T |
|
| Q |
190 |
gcaaccggatccaaacactcgcctgcatggtaggtagaagcccacaacaaggggttgtccttctcactggcaaaacttctcatcatgtgcctaatggaat |
289 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| | ||||||| ||||||||||||||||||||||| |
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| T |
40685157 |
gcaacaggatccaagcactcgcctgcatggtaggtagaggcccataacaaggggttttccttttcattagcaaaacctctcatcatgtgcctaatggaat |
40685058 |
T |
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| Q |
290 |
ccgttgatacaactgtcgtgattcccaatctgctaccctgaagtgaagatataaata |
346 |
Q |
| |
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| |||||||||||||| |||||||||| | || ||||||||| |||||||||||| |
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| T |
40685057 |
cagttgatacaactgttgtgattcccagccgacttccctgaagtaaagatataaata |
40685001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 538
Target Start/End: Complemental strand, 40684848 - 40684774
Alignment:
| Q |
464 |
tataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagcactgtcacagattgcttc |
538 |
Q |
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|||||||| | ||||||||| || ||||| ||||| || ||||| ||||| || |||||||||||||||| |||| |
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| T |
40684848 |
tataccagcaatgcagacaatgtggatttcccacaaccactagttccacacaaaagcactgtcacagattccttc |
40684774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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