View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_high_9 (Length: 517)
Name: NF17635_high_9
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 42981232 - 42980737
Alignment:
| Q |
18 |
atcctctcttacgcaggttgtccggttcgctaatagtttaattgatgctaggaatgagcttcaacacaagtatgtccaagtttattctaatgtatttact |
117 |
Q |
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| T |
42981232 |
atcctctcttacgcaggttgtccggttcgctaatagtttaattgatgctaggaatgagcttcaacacaagtatgtccaagtttattctaatgtatttact |
42981133 |
T |
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| Q |
118 |
tcatattttgcctttttactcgtggaaatttatttggaaagacattgaagacttctgtctagtttgcaactatgatagttgctctctatttatttatatt |
217 |
Q |
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| T |
42981132 |
tcatattttgcctttttactcgtggaaatttatttggaaagacattgaagacttctgtctagtttgcaactatgatagttgctctctat----ttatatt |
42981037 |
T |
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| Q |
218 |
aaaggttctgaagtgttgactttctcttgttaatcaaacaaagcatctgacttatataacatcattttctagtagaattgatatatttaaaaaatcaact |
317 |
Q |
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| T |
42981036 |
aaagtttctgaagtgttgactttctcttgttaatcaaacaaagcatctgacttatataacatcattttctagtagaattgatatatttaaaaaatcaact |
42980937 |
T |
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| Q |
318 |
aacttgtaggttatttgcaaattcagatgttgtcattttatgtaaggaatatatttagtatattcttctcagttttccnnnnnnnttatgttgattaaag |
417 |
Q |
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| T |
42980936 |
aacttgtaggttatttgcaaatttagatgttgtcattttatgtaaggaatatatttagtatattcttctcagttttccaaaaaaattatgttgattaaag |
42980837 |
T |
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| Q |
418 |
ttctgattgctttttcaacgttttattcttacagggctgacgtgattcaaagaaagtttgtaataacaaaggctttactatgcaaggcagacagatcttc |
517 |
Q |
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| T |
42980836 |
ttctgattgctttttcaacgttttatacttacagggctgacgtgattcaaagaaagtttgtaataacaaaggctttactatgcaaggcagacagatcttc |
42980737 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 5466257 - 5466321
Alignment:
| Q |
30 |
gcaggttgtccggttcgctaatagtttaattgatgctaggaatgagcttcaacacaagtatgtcc |
94 |
Q |
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||||||||| | ||| || |||||||| |||||||||||| |||||| |||||||||||||||| |
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| T |
5466257 |
gcaggttgtacagtttgcaaatagtttggttgatgctaggagtgagctacaacacaagtatgtcc |
5466321 |
T |
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