View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_1 (Length: 678)
Name: NF17635_low_1
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 10 - 660
Target Start/End: Complemental strand, 39982685 - 39982035
Alignment:
| Q |
10 |
catcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982685 |
catcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattt |
39982586 |
T |
|
| Q |
110 |
aagtctttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcct |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982585 |
aagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcct |
39982486 |
T |
|
| Q |
210 |
aacatgacacaaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccct |
309 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982485 |
aacatgacaccaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccct |
39982386 |
T |
|
| Q |
310 |
caaatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctccccttgtagtctcttctggtccatgtaataagagagtctcgagatt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982385 |
caaatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctccccttgtagtctcttctggtccatgtaataagagagtctcgagatt |
39982286 |
T |
|
| Q |
410 |
gcctatctgttaaaatatggtcaaatgagtaaggtcacaattctataatattgaaatagttattttaatctggagactacagtttagatactgtcattta |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39982285 |
gcctatctgttaaaatatggtcaaatgagtaaggtcacaattctataatattgaaatagttattttaatctggagactacaatttagatactgtcattta |
39982186 |
T |
|
| Q |
510 |
attaccaagatatatcctgtgtcatccgggtctagttcttccatgatcaaagccgcatattcctctgcttgtttctggatatttgacagtttgttggcag |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982185 |
attaccaagatatatcctgtgtcatccgggtctagttcttccatgatcaaagccgcatattcctctgcttgtttctggatatttgacagtttgttggcag |
39982086 |
T |
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| Q |
610 |
tggcactcaggcatataatctgaagcagaattacataaaatatgatcaaat |
660 |
Q |
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| T |
39982085 |
tggcactcaggcatataatctgaagcagaattacataaaatatgatcaaat |
39982035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 44914682 - 44914329
Alignment:
| Q |
11 |
atcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattta |
110 |
Q |
| |
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|||||||||||||||| | |||||| |||||||| ||||| ||||| |||||||||||||| |||||||| || |||||||| |||||||||||||| |
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| T |
44914682 |
atcatcaaaaggaacagcaatgcctagtttggtcttgttcctaagccatgtgatggtgtttcgacaaacaggtaacaagataatagccatgttcaatttg |
44914583 |
T |
|
| Q |
111 |
agtctttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggccta |
210 |
Q |
| |
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||| | ||||| || ||||| |||||||||||||| || ||||| |||| ||| ||| | |||| || || |||| ||||| |||||||||| || |
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| T |
44914582 |
agtgtctcagctgcacctttagccatgcacacacaatgacccattacttcataagcatcttttcttctgtactgcatgaatttgtaggcaaatagaccac |
44914483 |
T |
|
| Q |
211 |
acatgacacaaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccctc |
310 |
Q |
| |
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|||| |||| |||||| || | |||| ||| | |||| |||| || ||||| | ||||| ||| ||||||||||| | || || |||||| || |
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| T |
44914482 |
acataacaccaatccatagtaccaatatccaagttctttgccaattgtcctgcagaaagtaaatggcatctctatacctcttccgaacaggattgtattc |
44914383 |
T |
|
| Q |
311 |
aaatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctcc |
364 |
Q |
| |
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| ||||| | |||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
44914382 |
atatgtacccttaagctttatgcttagcatttggctcaggtacttactatctcc |
44914329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 44898767 - 44898551
Alignment:
| Q |
12 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
111 |
Q |
| |
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||||||||||||||| | ||||||||||||||| | ||| ||||| || | |||||||||||||||||| ||||||||||||||||| |||||||| | |
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| T |
44898767 |
tcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaacaggtaataagataatggccatattcaatttga |
44898668 |
T |
|
| Q |
112 |
gtctttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
211 |
Q |
| |
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|| | ||||| || ||||| ||||| || ||||| || |||||||||| |||||||| | |||| ||||| |||| ||||| |||||||||| || | |
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| T |
44898667 |
gtgtctcagctgcacctttagccatacagacacaatggcccatcacttcatatgcagcttttcttctatactgcatgaatttgtaggcaaatagaccaca |
44898568 |
T |
|
| Q |
212 |
catgacacaaatccaca |
228 |
Q |
| |
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||| |||| |||||||| |
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| T |
44898567 |
cataacaccaatccaca |
44898551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 44885439 - 44885223
Alignment:
| Q |
12 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
111 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||| |||||||||| || | ||||||||||||||||| || ||||||| |||||||||||||| | |
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| T |
44885439 |
tcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataagagccatgttcaatttga |
44885340 |
T |
|
| Q |
112 |
gtctttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
211 |
Q |
| |
|
|| | ||||| || ||||| |||||||| ||||| || |||||||| | ||| |||| | |||| | ||| ||||||||||| |||||||||| ||||| |
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| T |
44885339 |
gtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaa |
44885240 |
T |
|
| Q |
212 |
catgacacaaatccaca |
228 |
Q |
| |
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||| || | |||||||| |
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| T |
44885239 |
cataactccaatccaca |
44885223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 508 - 633
Target Start/End: Complemental strand, 44913808 - 44913683
Alignment:
| Q |
508 |
taattaccaagatatatcctgtgtcatccgggtctagttcttccatgatcaaagccgcatattcctctgcttgtttctggatatttgacagtttgttggc |
607 |
Q |
| |
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||||||||| |||| |||| || ||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||||| | |
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| T |
44913808 |
taattaccatgataaatccagtatcatcagggtctagttcttccatgatcaaagcagcatattcctctgcctgcttctgtatgtttgagagtttgtttgt |
44913709 |
T |
|
| Q |
608 |
agtggcactcaggcatataatctgaa |
633 |
Q |
| |
|
||||||||| ||||| |||||||||| |
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| T |
44913708 |
agtggcactaaggcaaataatctgaa |
44913683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 46562141 - 46562214
Alignment:
| Q |
11 |
atcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggca |
84 |
Q |
| |
|
||||||||| ||||||| | | |||| |||||||| | |||||||||||||||||||||| |||||||||| |
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| T |
46562141 |
atcatcaaagggaacaacaactcctaatttggtcttgcttctgagccaagtgatggtgtttctacaaacaggca |
46562214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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