View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_10 (Length: 500)
Name: NF17635_low_10
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 41830627 - 41830147
Alignment:
| Q |
18 |
acttcatcatcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacacgttgcctatgatggatcatagtggatact |
117 |
Q |
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| T |
41830627 |
acttcatcatcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacacgttgcctgtgatggatcatagtggatact |
41830528 |
T |
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| Q |
118 |
tcaacaatacagttactacaatgccatgcttttcgtcacaaaatcatgaagttgaaattaaaggttcttatttagaaaatggtgtgtttgggagtgtaaa |
217 |
Q |
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| T |
41830527 |
tcaacaatacagttactacaatgccatgcttttcgtcacaaaatcacgaagttgaaattaaaggttcttatttagaaaatggtgtgtttgggagtgtaaa |
41830428 |
T |
|
| Q |
218 |
tattggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattattttgatgacataaagataaacaatatgctt |
317 |
Q |
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| T |
41830427 |
tattggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattattttgatgacataaagataaacaatatgctt |
41830328 |
T |
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| Q |
318 |
agtaactgcaatattattgaaagcaataataatgaaattgaaagtaggggt---gtagtggagaatttatttcaagaacaattcaacttgggagaatggg |
414 |
Q |
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| T |
41830327 |
agtaactgcaatattattgaaagcaataataataaaattgaaagtaggggtgaagtagtggagaatttatttcaagaacaattcaacttgggagaatggg |
41830228 |
T |
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| Q |
415 |
attttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatctgtgctcct |
495 |
Q |
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| T |
41830227 |
attttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatttgtgttcct |
41830147 |
T |
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