View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_12 (Length: 432)
Name: NF17635_low_12
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 32000021 - 32000439
Alignment:
| Q |
1 |
caaccggcattccatgtctttacctgaagtaattatccaatgcttagcaacaaatttagattcaggactttgaaatactttagaaacctgtgatcaataa |
100 |
Q |
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| T |
32000021 |
caaccggcattccatgtctttacctgaagtaattatccaatgcttagcaacaaatttagattcaggactttgaaatactttagaaacctgtgatcaataa |
32000120 |
T |
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| Q |
101 |
caaaggataatccaaaattnnnnnnntgagcactacaaaaataatatatgaattgctaaggtnnnnnnngtgtaatgaattggtaaggtaaaa-aataaa |
199 |
Q |
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| T |
32000121 |
caaaggataatccaaaattaaaaaaatgtgcactacaaaaataatatatgaattgctaaggtaaaagaagtgtaatgaattgctaaggtaaaaaaataaa |
32000220 |
T |
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| Q |
200 |
tgaattgttgcacatggtgagtaaggattgtagtacaatacaaattaaagagcatggtcaaaactttaatttcaaaactttccattttattgttgatata |
299 |
Q |
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| T |
32000221 |
taaattgttgcacatggtgagtaaggattgtagtacaatacaaattaaagaccatggtcaaaactttaatttcaaaactttccattttattgttgatata |
32000320 |
T |
|
| Q |
300 |
aatattgattgtgaaaatgcaagaacatacatagtaatagtatggtcagatatgccttgcagtgttaggtggttggaaagactgtgtttcatgtacggag |
399 |
Q |
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| T |
32000321 |
aatattgattgtgaaaatgcaagaacacacatagtaatagtatggtcagatatgccttgcagtgttaggtggttggaaagactgtgtttcatgtacggag |
32000420 |
T |
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| Q |
400 |
gtcagactcagatatatat |
418 |
Q |
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||||||||||||||||||| |
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| T |
32000421 |
gtcagactcagatatatat |
32000439 |
T |
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