View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_15 (Length: 420)
Name: NF17635_low_15
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 74 - 402
Target Start/End: Complemental strand, 16814229 - 16813901
Alignment:
| Q |
74 |
aaaggtaaaaatgtgcatgttaagtatacatattttttaaaaattgagtatacatatatcatctcagatcgaaaaagcacaaataaagatagcatgcgct |
173 |
Q |
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| T |
16814229 |
aaaggtaaaaatgtgcatgttaagtatacatattttttaaaaattgagtatacatatatcatctcagatcgaaaaagcacaaataaagatagcatgcgct |
16814130 |
T |
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| Q |
174 |
gaagatcttccttgagatttggacaagaaaattaactagccatctttttgtcaagattgctgaatgcagttttgtttccaggtcgcgagaaaaccatcta |
273 |
Q |
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| T |
16814129 |
gaagatcttccttgagatttggacaagaaaattaactagccatctttttgtcaagattgctgaatgcagttttgtttccaggtcgcgagaaaaccatcta |
16814030 |
T |
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| Q |
274 |
catgtacataaaaaccaatcattttcttgttcaacttacaactataggcaatctatctatacatattaaatttatgataaatgtgcagttaaaatgattt |
373 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
16814029 |
catgtacataaaaaccaatcattttcttgttcaaattacaactataggcaatctatctatacatgttaaatttatgataaatgtgcagttaaaatgagtt |
16813930 |
T |
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| Q |
374 |
tatttttgcctaagggcttaagagctaag |
402 |
Q |
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| T |
16813929 |
tatttttgcctaagggcttaagagctaag |
16813901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 1453618 - 1453691
Alignment:
| Q |
228 |
gattgctgaatgcagttttgtttccaggtcgcgagaaaaccatctacatgtacataaaaaccaatcattttctt |
301 |
Q |
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| T |
1453618 |
gattgctgaatgcagtattgtttccagcgcgcgagaaaaccatctacatgtacttaaaaaccaatcattttctt |
1453691 |
T |
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