View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17635_low_18 (Length: 407)
Name: NF17635_low_18
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 397
Target Start/End: Original strand, 3090474 - 3090849
Alignment:
| Q |
21 |
tctaatgactaatcctcaatttctcaatttggacaaaccaaacatatattaatcaacctatagaacattacctagggttttattttatttaccaataaat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3090474 |
tctaatgactaatcctcaatttctcaatttggacaaaccaaacatatattaatcaacctatagaacattacctagggttttattttatttaccaataaat |
3090573 |
T |
|
| Q |
121 |
aaatgttgctagcaattggaaaaggtgtaaaactaatatnnnnnnntcctgattatatacagatacaggtagaaaatacagttttatgcaagatgcaact |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3090574 |
aaatgttgctagcaattggaaaaggtgtaaaactaata-aaaaaaatcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaact |
3090672 |
T |
|
| Q |
221 |
tcagcaccaatcatatccttctatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttgg |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3090673 |
tcagcaccaatcatatccttctatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaacactgtccaaaaatcatagggttttgg |
3090772 |
T |
|
| Q |
321 |
tgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctttggtgttgcactttctgat |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3090773 |
tgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctttggtgttgcactttctgat |
3090849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 53 - 397
Target Start/End: Original strand, 3082150 - 3082493
Alignment:
| Q |
53 |
acaaaccaaacatatattaatcaacctatagaacattacctagggttttattttatttaccaataaataaatgttgctagcaattggaaaaggtgtaaaa |
152 |
Q |
| |
|
||||||||| | ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3082150 |
acaaaccaaccctattttaatcaacctatagaaaattacctaaggttttattttatttaccaataagtaaatgttgctagcaattggaaaaggtgtaaaa |
3082249 |
T |
|
| Q |
153 |
ctaatatnnnnnnntcctgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacat |
252 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3082250 |
ctaata-aaaaaaatcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatcctactatgattacat |
3082348 |
T |
|
| Q |
253 |
cataattggtggtggcactgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaat |
352 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3082349 |
catagttggtggtggcaccgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaat |
3082448 |
T |
|
| Q |
353 |
ccaaacataaccaatttaagtgcctttggtgttgcactttctgat |
397 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
3082449 |
ccaaacataaccaatttaagtgcctatggtgttccactctctgat |
3082493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 5499448 - 5499501
Alignment:
| Q |
242 |
tatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaaca |
295 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
5499448 |
tatgattacataatagtgggaggtggaactgcagggtgtcctttagctgcaaca |
5499501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University