View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_19 (Length: 407)
Name: NF17635_low_19
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 3948932 - 3949324
Alignment:
| Q |
1 |
cctaacaccaaactactattgacacaattggaatatacatatctcattatattgcaattttatatatacaaatatttttctaaattattcccaaaaacat |
100 |
Q |
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| T |
3948932 |
cctaacaccaaactactattgacacaattggaatatacatatctcattatattgcaattttatatatacaaatatttttctaaattattcccaaaaacat |
3949031 |
T |
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| Q |
101 |
gaaagaagcttcatccaagttggctttatggataatcttcattattcttgcatctaatacatgcttttggcttgcaggggtacaactcaaaaggatggta |
200 |
Q |
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| T |
3949032 |
gaaagaagcttcatccaagttggctttatggataatcttcattattcttgcatctaatacatgcttttggcttgcaggggtacaactcaaaaggatggta |
3949131 |
T |
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| Q |
201 |
gcagcacaggcacaacaaacttataatattaaatgtcaaacagatgcagactgtgaaagccgatgtgatgcaggagtttgcgaaaagaaatgtctcgagt |
300 |
Q |
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| T |
3949132 |
gcagcacaggcacaacaaacttataatattaaatgtcaaacagatgcagactgtgaaagccgatgtgatgcaggagtttgcgaaaagaaatgtctcgagt |
3949231 |
T |
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| Q |
301 |
tgcctagtatatgcctcaatggccaatgtgcttgtccctttggccctgaacattctgttaccaaaaccttgccaaattcaacatgtgcctttg |
393 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3949232 |
tgccgagtatatgcctcaatggccaatgtgcttgtccctttggccctgaacactctgttaccaaaaccttgccaaattcaacatgtgcctttg |
3949324 |
T |
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