View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_20 (Length: 405)
Name: NF17635_low_20
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 116 - 387
Target Start/End: Original strand, 21153134 - 21153402
Alignment:
| Q |
116 |
aaatatgaataactaattgatcatgaagtagtatattttagtttaatttagaggcaatagtctgtcttgataattataaatattttcatttacaacttgc |
215 |
Q |
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| T |
21153134 |
aaatatgaataactaattgatcatgaagtagtatattttagtttaatttggaggcaatagtctgtcttgataattataaatattttcatttacaacttgt |
21153233 |
T |
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| Q |
216 |
tgtcaatctattaacaatatattggtctcactcacacaaagatattgaaatgaagtcaagcctatacnnnnnnnacattggatataaaagttatatgtct |
315 |
Q |
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| T |
21153234 |
tgtcaatctattaacaatatattggtctcactcacacaaagatattgaaatgaagtcaagcctatactttttttacattagatataaaagttatatgtct |
21153333 |
T |
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| Q |
316 |
aatcctcgtattgaaatattagcagcactacattagacatgtcgaaaatatattttggttggggtatgattc |
387 |
Q |
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| T |
21153334 |
aatcctcgtaatgaaatatt---agcactacattagacatgtcgaaaatatattttggttggggtatgattc |
21153402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 21152518 - 21152614
Alignment:
| Q |
9 |
gagatgaactaatccaaatgaatgtctcttaatatactcaaaca---atcaatatgtaggttgtataaaattcttggtgagtattacaaaatgaggg |
102 |
Q |
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| T |
21152518 |
gagatgaactaatccaaatgaatgtctcttaatgtactcaaacaacaatcaatatgtaggttgtataaaattcttggtgagtattacaaaatgaggg |
21152614 |
T |
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