View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17635_low_23 (Length: 398)
Name: NF17635_low_23
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 33039501 - 33039130
Alignment:
| Q |
16 |
ataataacaaaagtgtgtggtgtaggggaccaatttgtgcttgttttggagatttaaggtggtggaggagcggcttcttgggaactactgccttaaacaa |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33039501 |
ataataacaaaagtgtgtggtgtgggggaccaatttgtgcttgttttggagatttaaggtggtggaggagcggcttcttgggaactactgccttaaacaa |
33039402 |
T |
|
| Q |
116 |
aggaaagatggacttgtctctaactgtcatgaccaaaagttatagctagagttacttggtcacgtgccatttataatgtgatagagcaaaagctagcaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33039401 |
aggaaagatggacttgtctctaactgtcatgaccaaaagttatagctagagttacttggtcacgtgccatttataatgtgatagagcaaaagctagcaaa |
33039302 |
T |
|
| Q |
216 |
acaaaatagtatatataggtagacatgatttcatgtatgtgtctcatttttggagttgtcaaaacgattttagtagtaaaatgaatttttgtcaacgtag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33039301 |
acaaaatagtatatataggtagacatgatttcatgtatgtgtctcatttttggagttgtcaaaacgattttagtagtaaaatgaatttttgtcaacgcag |
33039202 |
T |
|
| Q |
316 |
aatcaaacttatatatttaatttgtttttacatgaatgtattttaacataaatcattatatgttttattcat |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
33039201 |
aatcaaacttatatatttaatttgtttttacatgaatgtatctcaacataaatcattatatattttattcat |
33039130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 39953294 - 39953230
Alignment:
| Q |
16 |
ataataacaaaagtgtgtggtgtaggggaccaatttgtgcttgttttggagatttaaggtggtgga |
81 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39953294 |
ataataacaaa-gtgtgtggtgtaggggaccaatttgtacttgttttggagatttaaggtggtgga |
39953230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University