View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_24 (Length: 394)
Name: NF17635_low_24
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 46209601 - 46209285
Alignment:
| Q |
19 |
agtcatagtggatagcataacaacaggggttgtataagtataagtttaattgttttgtgcttcaaaagaagagtcattgttttgtttagtgcttatgttg |
118 |
Q |
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| T |
46209601 |
agtcatagtggatagcataacaataggggttgtataagtataagtttaattgttttgtgcttcaaaagaagagtcattgttttgtttagtgcttatgttg |
46209502 |
T |
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| Q |
119 |
agtttgtgttgatgtttattgcagcaaagacaacaacaaaacaaggaaaacaagcatggaagcaaagtgtgaagttagaaggcttcacataatctgctta |
218 |
Q |
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| T |
46209501 |
agtttgtgttgatgtttattgcagcaaagacaacaacaaaacaaggaaaacaagcatggaagcaaagtgtgaagttagaaggcttcacataatctgctta |
46209402 |
T |
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| Q |
219 |
tttagctacatgggtggttttgcagaacattatcgtctcattagtgttcttcgtctagctcaaaacgatgtttatctcaggtgaaactcatttatgttac |
318 |
Q |
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| T |
46209401 |
tttagctacatgggtggttttgcagaacattatcgtctcattagtgttcttcgtctagctcaaaacgatgtttatctcaggtgaaactcatttatgttac |
46209302 |
T |
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| Q |
319 |
atgtttagtaattctag |
335 |
Q |
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| T |
46209301 |
atgtttagtaattctag |
46209285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 46209264 - 46209222
Alignment:
| Q |
345 |
gcagctcataatggtattcataaatacatcatgagtattatct |
387 |
Q |
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| T |
46209264 |
gcagctcataatggtattcataaatacatcatgattattatct |
46209222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 73 - 316
Target Start/End: Complemental strand, 26306280 - 26306025
Alignment:
| Q |
73 |
ttgtgcttcaaaagaagagtcattgttttgtttagtgcttat-gttgagtttgtgttgatgtttattgcagcaaagacaacaacaaaacaagg------a |
165 |
Q |
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| T |
26306280 |
ttgtgtttcaaaagaagtgtcattgtttggttttggtgtcattgttgagtttgtgttggtgtttattacagcaaagataacaacaaaacaagttcatcaa |
26306181 |
T |
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| Q |
166 |
aaacaagcatggaagcaaagtgtg---aagttagaaggcttcacataatctgcttatttagctacatgggtggttttgcagaacattatcgtctcattag |
262 |
Q |
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| T |
26306180 |
aaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattcg |
26306081 |
T |
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| Q |
263 |
tgttcttcgtctagctcaaaacgatgtttatctc--aggtgaaactcatttatgtt |
316 |
Q |
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| T |
26306080 |
tgttcttcatcttgctcgaaacggtgtttatctcagaggtaaaactcgtttatgtt |
26306025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 781678 - 781565
Alignment:
| Q |
65 |
taattgttttgtgcttcaaaagaagagtcattgttttgtttagtgcttatgttgagtttgtgttgatgtttattgcagcaaagacaacaacaaaacaagg |
164 |
Q |
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|||||||||||||||||||| |||||||| |||||| |||||||| | |||||||||| ||||||||||| |||||||||||| |||| |||| ||| |
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| T |
781678 |
taattgttttgtgcttcaaacgaagagtcgttgtttggtttagtgactttgttgagtttatgttgatgtttcttgcagcaaagagaacagtaaaagaaga |
781579 |
T |
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| Q |
165 |
aaaacaagcatgga |
178 |
Q |
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|||||| ||||||| |
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| T |
781578 |
aaaacatgcatgga |
781565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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