View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17635_low_25 (Length: 392)

Name: NF17635_low_25
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17635_low_25
NF17635_low_25
[»] chr7 (5 HSPs)
chr7 (11-265)||(7118402-7118671)
chr7 (312-374)||(35772279-35772341)
chr7 (308-358)||(45034996-45035046)
chr7 (321-374)||(525626-525678)
chr7 (230-270)||(40796109-40796149)
[»] chr2 (3 HSPs)
chr2 (321-373)||(31415365-31415417)
chr2 (307-374)||(32944646-32944713)
chr2 (315-367)||(17281433-17281485)
[»] chr3 (2 HSPs)
chr3 (308-373)||(4401409-4401474)
chr3 (321-374)||(26899856-26899909)
[»] chr8 (3 HSPs)
chr8 (310-366)||(32101092-32101148)
chr8 (310-357)||(16972083-16972130)
chr8 (312-364)||(32736483-32736535)
[»] chr4 (7 HSPs)
chr4 (310-366)||(26617487-26617543)
chr4 (312-374)||(31012740-31012803)
chr4 (314-372)||(28009572-28009630)
chr4 (312-366)||(52965864-52965918)
chr4 (321-374)||(44278969-44279022)
chr4 (312-364)||(49142875-49142925)
chr4 (311-366)||(31804660-31804716)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 7118402 - 7118671
Alignment:
Q  11 cacagagcctagaacctttgatttagtaagtatatatttttgttagtgttaccgaatgattttgtcagagttagtgaaatgatgttttgtatct------ 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          
T  7118402 cacacagcctagaacctttgatttagtaagtatatatttttgttagtgttactgaatgattttgtcagagttagtgaaatgatgttttgtatcttgagat 7118501  T
Q  105 ---------tttaaacctatttcaacacatgtaagttgataattacttatatttatatcaacgtggttacaatcacaaataaaaaacatttaagcataca 195  Q
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7118502 ctttgatcttttaaacctatttcaacacatgtaagttgataaatacttatatttatatcaacgtggttacaatcacaaattaaaaacatttaagcataca 7118601  T
Q  196 cataagagtaatcatttaattatatattaaaaatgtgtatgtttagtttcacttatagaggggccaatat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7118602 cataagagtaatcatttaattatatattaaaaatgtgtatgtttagtttcacttatagaggggccaatat 7118671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 35772279 - 35772341
Alignment:
Q  312 atttgtagtttttaattttaaaattgattcttatacataaatttataattcaacttattttta 374  Q
    ||||||||||||| |||||| |||||||| | | | ||||||||||||||||| ||| |||||    
T  35772279 atttgtagtttttgattttagaattgattttcacaaataaatttataattcaatttactttta 35772341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 45035046 - 45034996
Alignment:
Q  308 ttgaatttgtagtttttaattttaaaattgattcttatacataaatttata 358  Q
    ||||| ||| |||||||||||||| |||||||| ||||| |||||||||||    
T  45035046 ttgaaattgaagtttttaattttagaattgatttttatatataaatttata 45034996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 525678 - 525626
Alignment:
Q  321 ttttaattttaaaattgattcttatacataaatttataattcaacttattttta 374  Q
    |||| ||| ||||||||||| |||||||||||||||||||| |||| |||||||    
T  525678 tttttattctaaaattgatt-ttatacataaatttataatttaactcattttta 525626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 40796149 - 40796109
Alignment:
Q  230 gtgtatgtttagtttcacttatagaggggccaatattgatt 270  Q
    |||||||||| |||||||||||| ||||||||| |||||||    
T  40796149 gtgtatgtttggtttcacttatataggggccaagattgatt 40796109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 31415365 - 31415417
Alignment:
Q  321 ttttaattttaaaattgattcttatacataaatttataattcaacttattttt 373  Q
    ||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||    
T  31415365 ttttaattttagaattgattcttacacacaaatttataattcaacttactttt 31415417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 32944646 - 32944713
Alignment:
Q  307 attgaatttgtagtttttaattttaaaattgattcttatacataaatttataattcaacttattttta 374  Q
    |||||| ||| ||||||||||||||||||||| | |||||   ||||||||||||||| ||| |||||    
T  32944646 attgaacttgaagtttttaattttaaaattgaattttatattcaaatttataattcaatttaatttta 32944713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 17281433 - 17281485
Alignment:
Q  315 tgtagtttttaattttaaaattgattcttatacataaatttataattcaactt 367  Q
    ||||| ||| |||||||||||||||| | ||||| |||||||||||| |||||    
T  17281433 tgtagctttcaattttaaaattgattttaatacacaaatttataattgaactt 17281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 4401474 - 4401409
Alignment:
Q  308 ttgaatttgtagtttttaattttaaaattgattcttatacataaatttataattcaacttattttt 373  Q
    |||||||||||| |||| |||||||| |||||| ||| |||  ||||||||||||||||| |||||    
T  4401474 ttgaatttgtagcttttgattttaaagttgatttttacacaccaatttataattcaactttttttt 4401409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 26899856 - 26899909
Alignment:
Q  321 ttttaattttaaaattgattcttatacataaatttataattcaacttattttta 374  Q
    ||||||||||||| |||||||  ||||| |||||||||||||| ||||||||||    
T  26899856 ttttaattttaaacttgattcgaatacacaaatttataattcaccttattttta 26899909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 32101092 - 32101148
Alignment:
Q  310 gaatttgtagtttttaattttaaaattgattcttatacataaatttataattcaact 366  Q
    ||||||||||||||||||||||||||| ||| | ||| | ||||||||| |||||||    
T  32101092 gaatttgtagtttttaattttaaaattaattttcatatacaaatttatagttcaact 32101148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 16972130 - 16972083
Alignment:
Q  310 gaatttgtagtttttaattttaaaattgattcttatacataaatttat 357  Q
    |||||||||||||||||||||| |||||||| ||| ||| ||||||||    
T  16972130 gaatttgtagtttttaattttagaattgatttttaaacacaaatttat 16972083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 32736483 - 32736535
Alignment:
Q  312 atttgtagtttttaattttaaaattgattcttatacataaatttataattcaa 364  Q
    ||||||||||||| ||||||||||| ||| ||| ||| ||||||||| |||||    
T  32736483 atttgtagttttttattttaaaattaatttttacacacaaatttatagttcaa 32736535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 26617487 - 26617543
Alignment:
Q  310 gaatttgtagtttttaattttaaaattgattcttatacataaatttataattcaact 366  Q
    |||| ||||| |||| ||| ||||||||||| ||||| |||||||||||||||||||    
T  26617487 gaatctgtagcttttgattataaaattgatttttatagataaatttataattcaact 26617543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 31012803 - 31012740
Alignment:
Q  312 atttgtagtttttaattttaaaattgattctt-atacataaatttataattcaacttattttta 374  Q
    |||||||||||||||||||| |||||||| || | ||||| ||||||| ||||||| |||||||    
T  31012803 atttgtagtttttaattttagaattgatttttcacacatatatttatagttcaactcattttta 31012740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 28009630 - 28009572
Alignment:
Q  314 ttgtagtttttaattttaaaattgattcttatacataaatttataattcaacttatttt 372  Q
    ||||| ||||||||| ||||||||||| ||| | | ||||||||||||||||| |||||    
T  28009630 ttgtaatttttaattctaaaattgattattacaaacaaatttataattcaactcatttt 28009572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 52965918 - 52965864
Alignment:
Q  312 atttgtagtttttaattttaaaattgattcttatacataaatttataattcaact 366  Q
    |||| ||| |||| ||| ||||||||||||| | |||||||||||||||||||||    
T  52965918 atttatagcttttgattctaaaattgattctaacacataaatttataattcaact 52965864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 44279022 - 44278969
Alignment:
Q  321 ttttaattttaaaattgattcttatacataaatttataattcaacttattttta 374  Q
    |||| ||||||||||||||||| | |||||||||| |||||||| | |||||||    
T  44279022 tttttattttaaaattgattctaacacataaatttttaattcaaatcattttta 44278969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 49142875 - 49142925
Alignment:
Q  312 atttgtagtttttaattttaaaattgattcttatacataaatttataattcaa 364  Q
    |||||||||||||||||||| |||||||||| || |  |||||||||||||||    
T  49142875 atttgtagtttttaattttataattgattctaatgc--aaatttataattcaa 49142925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 31804660 - 31804716
Alignment:
Q  311 aatttgtagtt-tttaattttaaaattgattcttatacataaatttataattcaact 366  Q
    ||||||||||| ||| |||||||||||| ||  || |||||||||||||||||||||    
T  31804660 aatttgtagttattttattttaaaattgctttgtacacataaatttataattcaact 31804716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University