View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_26 (Length: 381)
Name: NF17635_low_26
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 50640649 - 50641011
Alignment:
| Q |
1 |
aataagaaacaaagagactaaaaatgaatactatggagatagctgataattgaacacccttaggtggcaaatacaaagttcataggagcaatttgattag |
100 |
Q |
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| T |
50640649 |
aataagaaacaaagagactaaaaatgaatactatggagatagctgataattgaacacccttaggtggcaaatacaaagttcatag-agcaatttgattag |
50640747 |
T |
|
| Q |
101 |
acaaatatcatattgtacaatatgatataatattannnnnnnngaaaggaatatgatataatattactaaattgcatgatgacgatgatgatattattta |
200 |
Q |
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| T |
50640748 |
acaaatatcatattgtacaatatgatataatattattttttttgaaaggaatatgatataatattactaaagtgcatgatgacgatgatgctattattta |
50640847 |
T |
|
| Q |
201 |
agtaaattaatagctatagagtctagagcaattgtttaacaatagctgctgttatgactgctacatcatgcatatcaatgttctcatcagagattggtga |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50640848 |
agtaaattactagctatagagtctagagcaattgtttaacaatagctgctgttatgactgctacatcatgcatatcaatattctcatcagagattggtga |
50640947 |
T |
|
| Q |
301 |
cttccctttgaagccattctcacaagtagtggcgtcatttgcagcatcatttgcaccatcttct |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50640948 |
cttccctttgaagccattctcacaagtagtggcgtcatttgcagcatcatttgcaccatcttct |
50641011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 160 - 364
Target Start/End: Original strand, 50635715 - 50635919
Alignment:
| Q |
160 |
aatattactaaattgcatgatgacgatgatgatattatttaagtaaattaatagctatagagtctagagcaattgtttaacaatagctgctgttatgact |
259 |
Q |
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||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50635715 |
aatattattaaattgcatgatgacgatgatgatataatttgagtaaattagtagctatagaatctagagcaattgtttaacaatagctgctgttatgact |
50635814 |
T |
|
| Q |
260 |
gctacatcatgcatatcaatgttctcatcagagattggtgacttccctttgaagccattctcacaagtagtggcgtcatttgcagcatcatttgcaccat |
359 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| ||||| ||||||||||||||| |
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| T |
50635815 |
gctacatcatgcatatcaatattctcatcagagattggtgatttccctttgaatccattctcacaagtggtggcttcaattgcaacatcatttgcaccat |
50635914 |
T |
|
| Q |
360 |
cttct |
364 |
Q |
| |
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||||| |
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| T |
50635915 |
cttct |
50635919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 50635651 - 50635706
Alignment:
| Q |
67 |
gcaaatacaaagttcataggagcaatttgattagacaaatatcatattgtacaata |
122 |
Q |
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|||||| | |||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
50635651 |
gcaaatgcgaagttcatagcagcaatttgattagacaaatatcatattgtataata |
50635706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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