View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_3 (Length: 630)
Name: NF17635_low_3
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 3100072 - 3100514
Alignment:
| Q |
18 |
agagacgagtgtaaggcggtgttccgtggcgggaggtttatagttgttggtggttacacgacggagaatcaagggaggtttgagaggagtgcggaggcgt |
117 |
Q |
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| T |
3100072 |
agagacgagtgtaaggcggtgttccgtggcgggaggtttatagttgttggtggttacacgacggagaatcaagggaggtttgagaggagtgcggaggcgt |
3100171 |
T |
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| Q |
118 |
ttgattttgtgacgtggaagtggggtcaagtggaggaagagtatttggattgtgccacgtgtcctatgactttggtggacggtggtgatgaggaggagag |
217 |
Q |
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| T |
3100172 |
ttgattttgtgacgtggaagtggggtcaagtggaggaagagtatttggattgtgccacgtgtcctatgactttggtggacggtggtgatgaggaggagag |
3100271 |
T |
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| Q |
218 |
tgtttatatgtgttgcaatggtgaattggttatgatgaggggtcacacgtggcagaagatgggtagggttccagatgagatatgcaacgtggcgtatgtt |
317 |
Q |
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| T |
3100272 |
tgtttatatgtgttgcaatggtgaattggttatgatgagggctcacacgtggcagaagatgggtagggttccagatgagatatgcaacgtggcgtatgtt |
3100371 |
T |
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| Q |
318 |
ggagcgttcgatggttttgtggttgtgattggatcaagtggctatggtgaagtgcatatgggttatgtttttgatgtaaataataataattggagaaaat |
417 |
Q |
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| T |
3100372 |
ggagcgttcgatggttttgtggttgtgattggatcaagtggctatggtgaagtgcatatgggttatgtttttgatgtaaataataataattggagaaaat |
3100471 |
T |
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| Q |
418 |
tggattgtccagatgggtttaagggacatgtccaaactggttg |
460 |
Q |
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| T |
3100472 |
tggattgtccagatgggtttaagggacatgtccaaactggttg |
3100514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 516 - 615
Target Start/End: Original strand, 3100569 - 3100668
Alignment:
| Q |
516 |
caactatcaatatgatattttgaagttgctaaactagtgggagttcaagtggagctatgttttttccataggctaaaactctatggttgatgtattggat |
615 |
Q |
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| T |
3100569 |
caactatcaatatgatattttgaagttgctaaactagtgggagttcaagtggagctatgttttttccataggctaaaactctatggttgatgtattggat |
3100668 |
T |
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