View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_31 (Length: 354)
Name: NF17635_low_31
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_31 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 49230770 - 49230435
Alignment:
| Q |
19 |
agctgtagtgaaatgcacatagtcgatcatattatattttaaaatatttaaaatctgtatattgaaatttagatagttggactttgatgtaaccatgtag |
118 |
Q |
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| T |
49230770 |
agctgtagtgaaatgcacatagtcgatcatattatattttaaattatttaaaatctgtatattgaaatttcgatagttggactttgatgtaaccatgtag |
49230671 |
T |
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| Q |
119 |
accactcaaatcccacaactaccatgcattgatgcataggcaacaacagaattaacctgtgttgctatttatcttggatattttgtgttgaaatcttaag |
218 |
Q |
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| T |
49230670 |
acaactcaaatcccacaactaccatgcattgatgcgtaggcaacaacagaattaacttgtgttgctatttatcttggatattttgtgttgaaattttaag |
49230571 |
T |
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| Q |
219 |
tagaagatacaatagaatatgagttagaaatctcattttgattagaaatttgagtgttgagtaaattatttaagtaagaggacttatacatctaatgtcc |
318 |
Q |
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| T |
49230570 |
tagaagatacaatagaatatgagttagaaatcttattttgattagaaatttgagtgttgagtaaattatttaagtaaaaggatttatacatctaatgtcc |
49230471 |
T |
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| Q |
319 |
taagaattcgggttaagagatgatgtccatctcatt |
354 |
Q |
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| T |
49230470 |
taagaattcgggttaagatgtgatgttcaactcatt |
49230435 |
T |
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