View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_33 (Length: 347)
Name: NF17635_low_33
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 129 - 340
Target Start/End: Original strand, 53000568 - 53000779
Alignment:
| Q |
129 |
tgtaggaatttgattttaactttagagtaagattacaagaatgaagagttgtcctttgctcagaaataaggtctatttatagtttagaatcataggcaag |
228 |
Q |
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| T |
53000568 |
tgtaggaatttgattttaactttagagtaagattacaagaatgaagagttgtcctttgctcagaaatatggtctatttatagtttagaatcatagacaag |
53000667 |
T |
|
| Q |
229 |
gcattaatttcgagttacaagccataaaccatagaattccaaaggtttgtaacaaccatttttgttctacaccggacgaacggtcgtgcttcacccacac |
328 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53000668 |
gcattaatttcgagttacaagccataaactatagaattccaaaggtttgtaacaaccatttttgttctacaccggacgaacggtcgtgcttcacccacac |
53000767 |
T |
|
| Q |
329 |
acaggttctgct |
340 |
Q |
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| T |
53000768 |
ataggttgtgct |
53000779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 131 - 296
Target Start/End: Complemental strand, 12521174 - 12521008
Alignment:
| Q |
131 |
taggaatttgattttaactttagagtaagattacaagaatgaagagttgtcctttgct-cagaaataaggtctatttatagtttagaatcataggcaagg |
229 |
Q |
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| T |
12521174 |
taggaacttgatttcaactttggagtaagattacaagtatgaagtcatgtcttttgccacataaattgggtatatttgtagcctagaatcatagacaatg |
12521075 |
T |
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| Q |
230 |
cattaatttcgagttacaagccataaaccatagaattccaaaggtttgtaacaaccatttttgttct |
296 |
Q |
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| T |
12521074 |
cattaatttcgagttacaagtcataaatgagagaatttcaaaagtttgtaacaaccattttggttct |
12521008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 29968452 - 29968570
Alignment:
| Q |
133 |
ggaatttgattttaactttagagtaagattacaagaatgaagagttgtcctttg-ctcagaaataaggtctatttatagtttagaatcataggcaaggca |
231 |
Q |
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|||| ||||||||||| || ||||||||||||||| |||||| | | || |||| |||| |||| | ||||||||||| |||||||||| |||| || |
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| T |
29968452 |
ggaacttgattttaacgttggagtaagattacaagtatgaagtgatatcttttgcctcataaatgatgtctatttataacctagaatcataaacaagaca |
29968551 |
T |
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| Q |
232 |
ttaatttcgagttacaagc |
250 |
Q |
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|||| |||||||||||||| |
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| T |
29968552 |
ttaaattcgagttacaagc |
29968570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 31603803 - 31603864
Alignment:
| Q |
235 |
atttcgagttacaagccataaaccatagaattccaaaggtttgtaacaaccatttttgttct |
296 |
Q |
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| T |
31603803 |
atttcgagttacaagctataaaccatagaattctaaaggtttgtaacaaccgtttttgttct |
31603864 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 26266265 - 26266199
Alignment:
| Q |
201 |
ctatttatagtttagaatcataggcaaggcattaatttcgagttacaagccataaaccatagaattc |
267 |
Q |
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| T |
26266265 |
ctatttatagtctaaaatcataggcaatccattaaattcgaattacaagccttaaactagagaattc |
26266199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 22826528 - 22826617
Alignment:
| Q |
201 |
ctatttatagtttagaatcataggcaaggcattaatttcgagttacaagccataaaccatagaattccaaaggtttgtaacaaccatttt |
290 |
Q |
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| T |
22826528 |
ctatttatagtctaaaatcatagacatgtcattaaattcgatttacaagtcttaaattagaaaattgcaaaagtttgtaacaaccatttt |
22826617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 4284782 - 4284693
Alignment:
| Q |
187 |
ctcagaaataaggtctatttatagtttagaatcataggcaaggcattaatttcgagttacaagccataaaccatagaattccaaaggttt |
276 |
Q |
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||||||||| | |||||||||||| ||||||||||| ||| |||| | ||||||||||| |||||||||| ||||||||| |||| |
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| T |
4284782 |
ctcagaaatgaagtctatttatagcctagaatcatagacaaaatattattctcgagttacaattcataaaccatcaaattccaaatgttt |
4284693 |
T |
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