View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_34 (Length: 346)
Name: NF17635_low_34
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 38867598 - 38867931
Alignment:
| Q |
1 |
aatgatatggtgaatgtctgtgtgaactgtgaagggtctatt-cagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacagtttgaga |
99 |
Q |
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| T |
38867598 |
aatgatatggtgagtgtctgtgtgaactgtgaagggtctatttcagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacaatatcaga |
38867697 |
T |
|
| Q |
100 |
agttcatgcttcaaaagaatgaaacagcnnnnnnnnnn--------catcaaataacactcattcaacccctttcaatctagaaatatggagtattattt |
191 |
Q |
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| T |
38867698 |
agttcctgcttcaaaaaaatgaaacagccaaaaaaaaaaaaaaaaacatcaaataacactcattcaacccctttcaatctagaaatatggagtatcattt |
38867797 |
T |
|
| Q |
192 |
tacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgcagatccctccccgttcagtgacc |
291 |
Q |
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| T |
38867798 |
tacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgcggatccct--ccgttcagtgacc |
38867895 |
T |
|
| Q |
292 |
aggataaccatggcccaactcttctagtgacctcac |
327 |
Q |
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| T |
38867896 |
aggataaccatggccaaactcttctagtgacctcac |
38867931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 38598698 - 38598804
Alignment:
| Q |
144 |
ataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattg |
243 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| |||||||||||| |
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| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagttctttaatgacaattggcaaaagaaaagtatagcactattg |
38598797 |
T |
|
| Q |
244 |
agccact |
250 |
Q |
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|| |||| |
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| T |
38598798 |
agtcact |
38598804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 39953790 - 39953726
Alignment:
| Q |
147 |
acactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaatt |
211 |
Q |
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| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattatttcacttttcagttctttaatt |
39953726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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