View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_35 (Length: 339)
Name: NF17635_low_35
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 184 - 322
Target Start/End: Complemental strand, 26316623 - 26316485
Alignment:
| Q |
184 |
gtggatcctcatagataggtattagtggaatgattcaaagaagtaactaagtgaaggtcaatagcaataaaaatgaatggagaaataataggaactgatt |
283 |
Q |
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| T |
26316623 |
gtggatcctcatagataggtattagtggaatgattcaaagaagcaactaagtgaaggtcaatagcaataaaaatgaatggagaaataataggaactgatt |
26316524 |
T |
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| Q |
284 |
ttagtttcctttgaatcctattcaacgtaatccacatct |
322 |
Q |
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| T |
26316523 |
ttagtttcctttgaatcctattcaacgtaatccacatct |
26316485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 26316781 - 26316625
Alignment:
| Q |
1 |
tgtactcaaatgaattcatcaagaggccactaaatatgggagtgtagtagtatcaccgtgaaagataaagagatagagagatcatgcgcttgatttgggt |
100 |
Q |
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| T |
26316781 |
tgtactcaaatgaattcatcaagaggccactaaatatgggagt--agtagtatcaccgtgaaagataaagagatagagagatcatgcacttgatttgggt |
26316684 |
T |
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| Q |
101 |
caaaaggaaacaagaactactttccaagtataagaaaggagaggaaaatcaattaggca |
159 |
Q |
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| T |
26316683 |
caaaaggaaacaagaattactttccacgtataagaaaggagaggaaaatcatttaggca |
26316625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 27026247 - 27026007
Alignment:
| Q |
5 |
ctcaaatgaattcatcaagaggccactaaatatgggagtgtagtagtatcaccgtgaaagataaagagata----gagagatcatgcgcttgatttgggt |
100 |
Q |
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| T |
27026247 |
ctcaaatgacttcatcaagagatcactaaata--ggagagtagaagtatcaccgtaaaagataaagcgatacatagagagatcatgcacttgatttgggt |
27026150 |
T |
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| Q |
101 |
caaaaggaaacaagaactac-tttccaag---------tataagaaaggagaggaaaatcaattaggcaaacatctctcaaaaccaattgcaagtggatc |
190 |
Q |
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| T |
27026149 |
caaaagaaatcatgaacaacttttccacgtagccgagttataagaaacgagaggaaaaacaattaggcatgtttctcttaaaactaattgcacgt-gatc |
27026051 |
T |
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| Q |
191 |
ctcatagataggta-ttagtggaatgattcaaagaagtaactaa |
233 |
Q |
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| T |
27026050 |
ctcatagataggtatttggtggaattattcaaagaagtaactaa |
27026007 |
T |
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