View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_39 (Length: 295)
Name: NF17635_low_39
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 44725847 - 44725555
Alignment:
| Q |
1 |
aatatcacaaatatggctttactttgcgagcagactttggtattttatcatttctggaatagtcatcgggacctcata----------------aatgtt |
84 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44725847 |
aatatcacaaatatggctttactttgcgagcaaactttggtattttatcatttctggaatagtcatcgggacctcatttagccggatatgccttaatgtt |
44725748 |
T |
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| Q |
85 |
cctttttgtacacataaatgaccaagatttttaaatcaaatatgtgagtgaatcttcccttccaaaccttaacgccctctatacccagccacctcaagtc |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44725747 |
cctttttgtacacataaatgaccaagatttttaaatcaaatatgtgagtgaatcttcccttccaaaccttaacgccttctatacccagccacctcaagtc |
44725648 |
T |
|
| Q |
185 |
atcatcgatgtaatctataatctaaatcttcaccttaattaattcaaacattgaagatcttttcatctgttgtgataacaataatggtttcta |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44725647 |
atcatcgatgtaatctataatctaaatcttcaccttaattaattcaaacattgaagatcttttcatctgttgtgataacaataatggtttcta |
44725555 |
T |
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