View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_47 (Length: 254)
Name: NF17635_low_47
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_47 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 22698100 - 22698338
Alignment:
| Q |
16 |
atgaacatgctggtgttggggaaaagtgatgagagattatcacttataagtgttaaaaactcaacacaagaagcctacaataagaactatgcacttttga |
115 |
Q |
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| T |
22698100 |
atgaacatgctggtgttagggaaaagtgatgagagattatcacttataagtgttaaaaactcaacacaagaagcctacaataagaactatgcacttttga |
22698199 |
T |
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| Q |
116 |
gcatacatgagaaattaaatttaccaaaacaaaatataaaaagcactgcaagcagaccaaatcttgaacttacaaatagttccatgtataaaacgatctg |
215 |
Q |
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| T |
22698200 |
gcatacatgagaaattaaatttagcaaaacaaaatataaaaagcactgcaagaagatcaaatcttaaacttacaaatagttccatgtataaaacgatctg |
22698299 |
T |
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| Q |
216 |
caattggacaaaacatagttgttagatttcactttatat |
254 |
Q |
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| T |
22698300 |
caattggacaaatcatagttattagatttcactttatat |
22698338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 22686303 - 22686536
Alignment:
| Q |
21 |
catgctggtgttggggaaaagtgatgagagattatcacttataagtgttaaaaactcaacacaagaagcctac-aataagaactatgcacttttgagcat |
119 |
Q |
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| T |
22686303 |
catgctggtgttggggaaaagtgcagagagattatcacttacaagtgttaaaaactcaacagaagcaccctacaaataagaacaatgcacctttgagcac |
22686402 |
T |
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| Q |
120 |
acatgagaaattaaatttaccaaaacaaaatataaaaagcactgcaagcagaccaaatcttgaacttacaaatagttccatgtataaaacgatctgca-a |
218 |
Q |
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| T |
22686403 |
acatttgagattaaatttagc--aatctaacatagaaagaattgcaaacagatcaagtcttgaacttacaaatagttccaaggataaaatgatctgcagc |
22686500 |
T |
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| Q |
219 |
ttggacaaaacatagttgttagatttcactttatat |
254 |
Q |
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| T |
22686501 |
ttgcacaaaacatagttgttagatttcactttatat |
22686536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 33097178 - 33097091
Alignment:
| Q |
22 |
atgctggtgttggggaaaagtgatgagagattatcacttataagtgttaaaaactcaacacaagaagcctaca-ataagaactatgcac |
109 |
Q |
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| T |
33097178 |
atgctagtgtaggggaaaagtgatgaaaggttatcaatgacaagtgttgaaaact-aacataagaagcttacatataaaaactatgcac |
33097091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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