View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17635_low_48 (Length: 254)

Name: NF17635_low_48
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17635_low_48
NF17635_low_48
[»] chr5 (3 HSPs)
chr5 (16-254)||(2450608-2450846)
chr5 (26-254)||(2461624-2461846)
chr5 (27-250)||(2445851-2446068)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 2450846 - 2450608
Alignment:
Q  16 ctcgcgaatggtagcaactgtttcttcagcatctttaactatcctttcttcatagataattgagtcattattggctgttttcagcttaaattcagcaaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2450846 ctcgcgaatggtagcaactgtttcttcagcatctttaactattctttcttcatagataattgagtcatcattggctgttttcagcttaaattcagcaaga 2450747  T
Q  116 aactcgccatcttcagaatctgatattgaattattgctagaagagtctccaacgtcaactttggtgatcttccctgcaatattaggttccactaagaagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2450746 aactcgccatcttcagaatctgatattgaattattgctagaagagtctccaacgtcaactttggtgatcttccctgcaatattaggttccactaagaagt 2450647  T
Q  216 gaataaccactaattgtatgccagggtgttcggccatac 254  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2450646 gaataaccactaattgtatgccagggtgttcggccatac 2450608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 2461846 - 2461624
Alignment:
Q  26 gtagcaactgtttcttcagcatctttaactatcctttcttcatagataattgagtcattattggctgttttcagcttaaattcagcaagaaactcgccat 125  Q
    ||||||||||||||| |||||||||| |||||   ||||||||||||||  ||||||| | | |||||||||||||||||||| ||||| |||||  |||    
T  2461846 gtagcaactgtttctgcagcatcttttactatttcttcttcatagataacagagtcataactagctgttttcagcttaaattctgcaaggaactcatcat 2461747  T
Q  126 cttcagaatctgatattgaattattgctagaagagtctccaacgtcaactttggtgatcttccctgcaatattaggttccactaagaagtgaataaccac 225  Q
    ||||      ||||||||||||| | |||||||||||||||||||||| |||||| ||||  ||  ||||||||||||||||||||||| ||||||||||    
T  2461746 cttc------tgatattgaattactcctagaagagtctccaacgtcaaatttggtaatctgtccaacaatattaggttccactaagaagcgaataaccac 2461653  T
Q  226 taattgtatgccagggtgttcggccatac 254  Q
    |||| ||||||||||||||||||||||||    
T  2461652 taatcgtatgccagggtgttcggccatac 2461624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 250
Target Start/End: Complemental strand, 2446068 - 2445851
Alignment:
Q  27 tagcaactgtttcttcagcatctttaactatcctttcttcatagataattgagtcattattggctgttttcagcttaaattcagcaagaaactcgccatc 126  Q
    |||||||||||||  |||||||||| |||||  | ||||| |||||||  ||||||| | |||||||||||||||||||||| ||||| |||||  ||||    
T  2446068 tagcaactgtttcggcagcatcttttactattttctcttcgtagataacggagtcatcactggctgttttcagcttaaattccgcaaggaactcctcatc 2445969  T
Q  127 ttcagaatctgatattgaattattgctagaagagtctccaacgtcaactttggtgatcttccctgcaatattaggttccactaagaagtgaataaccact 226  Q
           ||||| ||||| |||  | | || |||||||||||||||||  || | |||| ||||  |||| ||| ||||||||||||| |||||| ||||    
T  2445968 ------ctctgagattgatttaccgattgatgagtctccaacgtcaacgctgctaatctcccctaaaatagtagattccactaagaagcgaataatcact 2445875  T
Q  227 aattgtatgccagggtgttcggcc 250  Q
    |||  |||||||||||| ||||||    
T  2445874 aatcttatgccagggtgctcggcc 2445851  T

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