View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_51 (Length: 246)
Name: NF17635_low_51
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 938608 - 938824
Alignment:
| Q |
16 |
tggaggtgaaaatgtggatggaaaaaggatttatgatttctttctagcacttgcaacctgcaatactattgtgcctattgttgtcgacactccagatcct |
115 |
Q |
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| T |
938608 |
tggagttgaaaatgtggaaggaaaaaggatttatgatttctttctagcacttgcaacctgcaatactattgtgcctattgttgttgacacgcccgatcct |
938707 |
T |
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| Q |
116 |
gatgtcaagctgttagattaccaaggtgaatcgcctgatgaacaagcattggcgtatgccgctgctgcctatggttttatgcttatcgaacgaacctccg |
215 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
938708 |
gatgtcaagctgttagattaccaaggtgaatcacctgatgaacaagcattggcgtatgcagctgctgcctatggttttatgcttatcgaacgaacctccg |
938807 |
T |
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| Q |
216 |
gccacatagtcattgat |
232 |
Q |
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||||||||||||||||| |
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| T |
938808 |
gccacatagtcattgat |
938824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 16942799 - 16942999
Alignment:
| Q |
32 |
gatggaaaaaggatttatgatttctttctagcacttgcaacctgcaatactattgtgcctattgttgtcgacactccagatcctgatgtcaagctgttag |
131 |
Q |
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||||||||| ||||||| ||||||||||| ||||| || | |||||||||||||||||| |||| || ||||| | || ||| ||||||||| ||| |
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| T |
16942799 |
gatggaaaacggatttacgatttctttcttgcactggccgcatgcaatactattgtgcctcttgtagttgacacagccgaccctacagtcaagctgatag |
16942898 |
T |
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| Q |
132 |
attaccaaggtgaatcgcctgatgaacaagcattggcgtatgccgctgctgcctatggttttatgcttatcgaacgaacctccggccacatagtcattga |
231 |
Q |
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| T |
16942899 |
attatcaaggggaatcaccagatgaacaagccttgacatatgctgccgctgcctatggttttatgcttatagaacgaacctcaggtcacataatgattga |
16942998 |
T |
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| Q |
232 |
t |
232 |
Q |
| |
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| T |
16942999 |
t |
16942999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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