View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17635_low_56 (Length: 233)
Name: NF17635_low_56
Description: NF17635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17635_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 4891610 - 4891807
Alignment:
| Q |
18 |
agaatttataatgctagagagttgcatctcgcttcaatttatttatgtaaacaactgcctttattttatgagtaaatcatattcgcctccttataacctt |
117 |
Q |
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| T |
4891610 |
agaatttataatgctagagagttgcatctcgcttcaatttatttatgtaaacaactgcctttattttatgagtaaatcatattcgcctccttataacctt |
4891709 |
T |
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| Q |
118 |
aaattacacccaccttatctcttatgttataaaaacctaaaataaattatactgacttctttaagaaatgcttgaattataatttcctcctttaagaa |
215 |
Q |
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| T |
4891710 |
aaattacacccaccttatctcttatgttataaaaacctaaaataaattataccgacttctttaagaaatgcttgaattataattttctcctttaagaa |
4891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 4891935 - 4891992
Alignment:
| Q |
139 |
ttatgttataaaaacctaaaataaattatactgacttctttaagaaatgcttgaatta |
196 |
Q |
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||||||||| |||||||||||||||||||||| ||||| || |||||||| ||||| |
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| T |
4891935 |
ttatgttatgaaaacctaaaataaattatactcgcttctaaaaaaaatgcttaaatta |
4891992 |
T |
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