View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17636_high_1 (Length: 729)
Name: NF17636_high_1
Description: NF17636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17636_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 26 - 502
Target Start/End: Original strand, 4270497 - 4270965
Alignment:
| Q |
26 |
ctcaacacgtgttcagaaacaatgaaataagttatgacaggtggaattaaaaccaaaccaggttacaaagtgggtggtagactatatataatgcaattga |
125 |
Q |
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| T |
4270497 |
ctcaccacgtgttcagaaacaatgaaataagttatgacaggtggaattaaaaccaaaccaggttacaaagggggtggtagactatacataatgcaattga |
4270596 |
T |
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| Q |
126 |
aattttggtaatgcaaaatgcaacttatatatgcaatggtaaattaacaagttcacctaaacaactcaattatcgactttagctggactctgttatacgt |
225 |
Q |
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| T |
4270597 |
aattttggtaatgcaaaatgcaacttatatatgcaatgataaattaacaagttcacctaaacaactcaactatcgactttagctggactctgttatacgt |
4270696 |
T |
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| Q |
226 |
gtcctttattccttttctatttcattttttcaaagaacaattgcatggtaaatggtaatgcatacacaaactagagagaatatggatgtcaactaatact |
325 |
Q |
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| T |
4270697 |
gtcccttattccttttctatttcattttttcaaagaacaattgc-------atggtaatacatacacaaactagagagaatatggatgtcaactaatact |
4270789 |
T |
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| Q |
326 |
tgcacttagtggtagtggaatagaaaataccagaaactagagagaatatggatatgtcaatgtgatcaatagaaggttactggctactatacatggatat |
425 |
Q |
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| T |
4270790 |
tgcacttagtggtagtggaatagaaaataccagaaactagagagaatatggatatatcaatgtgatcaatagaaggttactggctactatacatggatat |
4270889 |
T |
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| Q |
426 |
aaatatagatatagatgcggtactggcaccgagcacatgatnnnnnnnnnntcactttattataacatctcacttag |
502 |
Q |
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| T |
4270890 |
aaatatagatatagatgcggtactggcaccgagcacatgat-aaaaaaaaatcactttattataacatctcacttag |
4270965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 578 - 704
Target Start/End: Original strand, 4271041 - 4271167
Alignment:
| Q |
578 |
catttgttgtttcctgtcttttttatcttaaccttccgatttttaaagaagggattatgataaatcaatatttggccggaacgtaaatagagtctgataa |
677 |
Q |
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|||||||||||| |||| |||||| |||||| | |||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||| || |
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| T |
4271041 |
catttgttgtttgctgttttttttgtcttaatcctccgatttttaaagaagggactctgataaatcaatatttggtcgggacgtaaatagagtctgacaa |
4271140 |
T |
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| Q |
678 |
ataattattttagccataattcaaact |
704 |
Q |
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| T |
4271141 |
ataattattttagccataattcaaact |
4271167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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