View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17636_high_14 (Length: 211)
Name: NF17636_high_14
Description: NF17636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17636_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 51529439 - 51529257
Alignment:
| Q |
13 |
caaaggaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatcccaaaaccgagcatgta |
112 |
Q |
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| T |
51529439 |
caaaagaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatcccaaaaccgagcatgta |
51529340 |
T |
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| Q |
113 |
gggattatttgaaaacttgcaataagcttcatggccatttttgtggaagcaaatcaatttctttatagccctgccacatttat |
195 |
Q |
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| T |
51529339 |
gggattatttgaaaacttgcaataagcttcatggccatttttgtggaagcaaatcaatttctttatagccctgccacatttat |
51529257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 12030416 - 12030523
Alignment:
| Q |
13 |
caaaggaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatcccaaaaccgagcatgta |
112 |
Q |
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| T |
12030416 |
caaacgaggtaattgcagcaacggttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaaatctgcaatgtcccaaaactaatcatgta |
12030515 |
T |
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| Q |
113 |
gggattat |
120 |
Q |
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| T |
12030516 |
gggattat |
12030523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 242721 - 242671
Alignment:
| Q |
69 |
atttgagacaataaaatctgaaagatcccaaaaccgagcatgtagggatta |
119 |
Q |
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| T |
242721 |
atttgagacaagaaaatctgcaatatcccaaaaccgatcatgtagggatta |
242671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 222671 - 222722
Alignment:
| Q |
69 |
atttgagacaataaaatctgaaagatcccaaaaccgagcatgtagggattat |
120 |
Q |
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||||||||||| |||||||| || ||||||||||||| ||| |||||||||| |
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| T |
222671 |
atttgagacaagaaaatctgcaatatcccaaaaccgatcatatagggattat |
222722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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