View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17636_high_3 (Length: 597)
Name: NF17636_high_3
Description: NF17636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17636_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 16 - 586
Target Start/End: Original strand, 36530 - 37101
Alignment:
| Q |
16 |
aataatagtgatgatcaatgagagagttaaattaaagaccttaaatttgattacatcgtttttatcttttccgtagtagatggatggatgaagcttaaag |
115 |
Q |
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| T |
36530 |
aataatagtgatgatcaatgagagagttaaattaaagaccttaaatttgattacatcgtttttatcttttccgtagtagatggatggatgaagcttaaag |
36629 |
T |
|
| Q |
116 |
actatcatatcttgtattacaatttttgtagtgaatcaaatttctcaattagatgcatgtttaaattttgattgttaatttacatcttttggtcactgaa |
215 |
Q |
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| T |
36630 |
actatcatatcttgtattacaatttttgtagtggatcaaatttctcaattagatgcatgtttaaattttgattgttaatttacatcttttggtcactgaa |
36729 |
T |
|
| Q |
216 |
cgtgtaaaaagtcctcaactttgtgatggtttataatagacatattcttgtgtaataggagaagaagaaaactcaacaaccacagctactatatgaggca |
315 |
Q |
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| T |
36730 |
cgtgtaaaaagtcctcaactttgtgatggtttataatagacatattcttgtgtaataggagaagaagaaaactcaacaaccacagctactatatgaggca |
36829 |
T |
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| Q |
316 |
aagttatataacattcttaaaggaggaagtaagttataaaagcatagcttcaatttatgttgaatcttgtttccctcacaata-ttttccctttgttttc |
414 |
Q |
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| T |
36830 |
aagttatataacattcttaaaggaggaagtaagttataaaagcatagcttcaatttatgttgaatcttgtttccctcacaatatttttccctttgttttc |
36929 |
T |
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| Q |
415 |
tcagtcctttctaatttattatagtaatggaatttaaggtggtattccaagaatgaaatggtttggtactgacggagactataatgttctagttcttgaa |
514 |
Q |
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| T |
36930 |
tcagtcctttctaatttattatagtaatggaatttaaggtggtattccaagaatgaaatggtttggtactgacggagactataatgttctagttcttgaa |
37029 |
T |
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| Q |
515 |
cttatgggcccgagtctcgatgacctgctttactactgtagtgggaagttttcgctaaaatcggttttgatg |
586 |
Q |
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| T |
37030 |
cttatgggcccgagtctcgatgacctgctttactactgcagtgggaagttttcgctaaaatcggttttgatg |
37101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 39595813 - 39595881
Alignment:
| Q |
62 |
ttgattacatcgtttttatcttttccgtagtagatggatggatgaagcttaaagactatcatatcttgt |
130 |
Q |
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| T |
39595813 |
ttgattacatcatttctagctttttggtagtatatggatggatgaaggtaaaagactataatatcttgt |
39595881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 37267953 - 37268049
Alignment:
| Q |
51 |
agaccttaaatttgattacatcgtttttatcttttccgtagtagatggatggatgaagcttaaagactatcatatcttgtattacaatttttgtagt |
147 |
Q |
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| T |
37267953 |
agacattaaatttgattacaatgttttttacttttaggtagtagatagatgaatgaaggtaaaagactatcatatcttgttttagaacttttttagt |
37268049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 10408317 - 10408238
Alignment:
| Q |
46 |
attaaagaccttaaatttgattacatcgtttttatcttttccgtagtagatggatggatgaagcttaaagactatcatat |
125 |
Q |
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| T |
10408317 |
attaaagacattaaatttgattacatcagttttagctttttagtagtagatggatcgatgaaggtgaacggctatcatat |
10408238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 13085188 - 13085098
Alignment:
| Q |
50 |
aagaccttaaatttgattacatcgtttttatcttttccgtagtagatggatggatgaagcttaaagactatcatatcttgtattacaatttt |
141 |
Q |
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| T |
13085188 |
aagacattaaatttgattacatcatttttagcttttcggtggtagatagaagaatgaag-ttaaaaactatcataccttgttttagaatttt |
13085098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 43222614 - 43222529
Alignment:
| Q |
47 |
ttaaagaccttaaatttgattacatcgtttttatcttttccg--tagtagatggatggatgaagcttaaagactatcatatcttgt |
130 |
Q |
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| T |
43222614 |
ttaaagacattaaatttgattacatcatttttagcttatcggtatagtagatggatgaatgaagatgaaaaactataatattttgt |
43222529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 43416879 - 43416953
Alignment:
| Q |
68 |
acatcgtttttatcttttccgtagtagatggatggatgaagcttaaagactatcatatcttgtattacaattttt |
142 |
Q |
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| T |
43416879 |
acatcatttttatctttttgatagtagatagatgaacgaagatgaaagactatcatatcttgttttagaattttt |
43416953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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