View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17636_high_6 (Length: 337)
Name: NF17636_high_6
Description: NF17636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17636_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 35354167 - 35353864
Alignment:
| Q |
20 |
caaagacaaagacagagaataatatgttagtcaatatcaaaacattactatatgtttcaaaattcatgctaaatatatgaactataagcgacaaacaaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354167 |
caaagacaaagacagagaataatatgttagtcaatatcaaaacattactatatgtttcaaaattcatgctaaatatatgaactataagcgacaaacaaaa |
35354068 |
T |
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| Q |
120 |
acttcatcaaaaaattaaagtaaatagnnnnnnngtcataaaaatatttttgtaa---tgacaaatgcagtatcatatttgagtaagtaaaagaaccttg |
216 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354067 |
actttatcaaaaaattaaagtaaatagttattttttcataaaaatatttttgtaaaaatgacaaatgcagtatcatatttgagtaagtaaaagaaccttg |
35353968 |
T |
|
| Q |
217 |
aagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatgatattgatatcttagcatatggaaagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
35353967 |
aagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatga---tgatatcatagcatatggaaagc |
35353871 |
T |
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| Q |
317 |
tctttat |
323 |
Q |
| |
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||||||| |
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| T |
35353870 |
tctttat |
35353864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 35377957 - 35377842
Alignment:
| Q |
207 |
aagaaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatgatattgatatcttagca |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| || || ||||||||||||| |
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| T |
35377957 |
aagaaccttgaagctcccaagaggttcccaaggccagtttgtaaggatgcctggtttggaagccatattatgaatttgcga--atgatgatatcttagca |
35377860 |
T |
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| Q |
307 |
tat-ggaaagctctttat |
323 |
Q |
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||| |||||||||||||| |
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| T |
35377859 |
tatgggaaagctctttat |
35377842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 35369068 - 35368982
Alignment:
| Q |
204 |
taaaagaaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatga |
290 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||||| |
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| T |
35369068 |
taaaagaaccttgaaactcccaagaggtttccaaggccagtttgtaaggattcctggtttggaagccatattatgaatttgggatga |
35368982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 19633552 - 19633643
Alignment:
| Q |
204 |
taaaagaaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatgatattg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||| |||| |
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| T |
19633552 |
taaaagaaccttgaagctcccaagaggtttccaaggccagtttgtaaggatgcccggtttggaagccataatatgaatttgtgatgagattg |
19633643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 19682609 - 19682523
Alignment:
| Q |
204 |
taaaagaaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccatattatgagtttgtgatga |
290 |
Q |
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||||| |||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||| || || |||||||||| |
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| T |
19682609 |
taaaacaaccttcaagctcccaagaggtttccaaggccagtttgtaaggatgcccgctttggaagccattgtaggaatttgtgatga |
19682523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 2259514 - 2259576
Alignment:
| Q |
210 |
aaccttgaagctcccaagaggtttccaaggccagtctgtaaggatgcctggtttggaagccat |
272 |
Q |
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||||||||| |||||||||||| |||| ||||| || ||||| ||||| |||||||| ||||| |
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| T |
2259514 |
aaccttgaatctcccaagaggtgtccatggccaatcagtaagtatgccaggtttggacgccat |
2259576 |
T |
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