View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17636_low_11 (Length: 243)

Name: NF17636_low_11
Description: NF17636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17636_low_11
NF17636_low_11
[»] chr8 (6 HSPs)
chr8 (59-226)||(11079944-11080111)
chr8 (56-152)||(1653206-1653302)
chr8 (56-152)||(1741582-1741678)
chr8 (1-52)||(11080099-11080150)
chr8 (12-41)||(1653360-1653389)
chr8 (12-41)||(1741736-1741765)
[»] chr5 (2 HSPs)
chr5 (56-166)||(28001379-28001489)
chr5 (12-41)||(28001292-28001321)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 11080111 - 11079944
Alignment:
Q  59 taagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgctgcttgcttatcaagccactcaaaca 158  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11080111 taagctatttcaaaaacttgtttcttgctcaatttgcattcactcccaaaccctacaaaaaaaaccgattttgctgcttgcttatcaagccactcaaaca 11080012  T
Q  159 tcgtagtctctgatcttgatcctattattgatcacgatccataaaaaattcctctatgtggcatctct 226  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11080011 tcgtagtctctgatcttgatcctattattgatcacgatccatcaaaaattcctctatgtggcatctct 11079944  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 1653302 - 1653206
Alignment:
Q  56 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgctgcttgcttatcaagccact 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1653302 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgttgcttgcttatcaagccact 1653206  T

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Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 1741678 - 1741582
Alignment:
Q  56 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgctgcttgcttatcaagccact 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  1741678 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaatccctacaaaaacaaccgattttgttgcttgcttatcaagccact 1741582  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11080150 - 11080099
Alignment:
Q  1 atctctaatagaaaccaataggtagaaaatcttcatcattaagctatttcaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11080150 atctctaatagaaaccaataggtagaaaatcttcatcattaagctatttcaa 11080099  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 1653389 - 1653360
Alignment:
Q  12 aaaccaataggtagaaaatcttcatcatta 41  Q
    ||||||||||||||||||||||||||||||    
T  1653389 aaaccaataggtagaaaatcttcatcatta 1653360  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 1741765 - 1741736
Alignment:
Q  12 aaaccaataggtagaaaatcttcatcatta 41  Q
    ||||||||||||||||||||||||||||||    
T  1741765 aaaccaataggtagaaaatcttcatcatta 1741736  T

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Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 28001379 - 28001489
Alignment:
Q  56 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgctgcttgcttatcaagccactcaa 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||    
T  28001379 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgttgtttgcctatcaagccactgaa 28001478  T
Q  156 acatcgtagtc 166  Q
    | |||| ||||    
T  28001479 atatcgcagtc 28001489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 28001292 - 28001321
Alignment:
Q  12 aaaccaataggtagaaaatcttcatcatta 41  Q
    ||||||||||||||||||||||||||||||    
T  28001292 aaaccaataggtagaaaatcttcatcatta 28001321  T

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