View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17636_low_2 (Length: 636)

Name: NF17636_low_2
Description: NF17636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17636_low_2
NF17636_low_2
[»] chr2 (5 HSPs)
chr2 (1-626)||(13715193-13715816)
chr2 (284-608)||(4848480-4848802)
chr2 (39-195)||(11511160-11511316)
chr2 (54-196)||(7068492-7068635)
chr2 (284-435)||(14659002-14659154)
[»] chr3 (3 HSPs)
chr3 (284-624)||(45907960-45908296)
chr3 (40-210)||(54103189-54103359)
chr3 (69-142)||(40283671-40283744)
[»] chr8 (5 HSPs)
chr8 (458-625)||(22917219-22917379)
chr8 (291-444)||(4784994-4785148)
chr8 (490-626)||(4784135-4784274)
chr8 (283-444)||(22917026-22917186)
chr8 (558-593)||(5320150-5320185)
[»] chr5 (2 HSPs)
chr5 (287-444)||(39773695-39773853)
chr5 (513-607)||(39773556-39773650)
[»] chr6 (2 HSPs)
chr6 (38-209)||(26353346-26353504)
chr6 (93-142)||(19138395-19138444)
[»] chr4 (3 HSPs)
chr4 (284-435)||(6127068-6127220)
chr4 (339-433)||(44398274-44398368)
chr4 (289-424)||(43810833-43810969)
[»] chr1 (1 HSPs)
chr1 (47-141)||(36686618-36686712)
[»] chr7 (1 HSPs)
chr7 (69-142)||(23015165-23015238)


Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Complemental strand, 13715816 - 13715193
Alignment:
Q  1 ttgcaaacaatgttggtgtactgttcttagttattctaagcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaa 100  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13715816 ttgcaaacaatgttagtgtacggttcttagttattctaagcatgtttttggcatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaa 13715717  T
Q  101 atctgccgtgactttattaagctaccatttggagcttttgtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaatgaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| ||    
T  13715716 atctgccgtgactttattaagctaccatttggagcttttgtgtaaacgcgatacattaccgtggttttctatagaacgtggtttgtcaaacgcaatggca 13715617  T
Q  201 aacatgctataagtctataaaaacctcattgtaaatattattcagcacacatcaaattgaacaaatctttatatatctttttgggtggcatttagcttgg 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13715616 aacatgctataagtttataaaaacctcattgtaaatattattcaacacacatcaaattgaacaaatctttatatatctttttgggtggcatttagcttgg 13715517  T
Q  301 acgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccacaccttatctaagcc 399  Q
    |||||| |||||| ||| |||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13715516 acgagtagaagaaatggtccatgatgcaccaatttttttaatgtttagattagacaatccaccaaatcttatcatactctacccacaccctatctaagcc 13715417  T
Q  400 atcaccaactctatctccttcattgctctttctctctcttggtacnnnnnnnnnnnnnatatcaatactattcaacaactcccctacagtagttccattg 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||   ||||||||||    
T  13715416 atcaccaactctatctccttcattgctctttctctctcttggtacttttttcatttttatatcaatactattcaacaactcccctac---agttccattg 13715320  T
Q  500 aaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagcacatacataag 599  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  13715319 aaatggtgatggttttaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagtacatacacaag 13715220  T
Q  600 aacttttttatagattattcatctcag 626  Q
    ||||||||||| |||||||||||||||    
T  13715219 aacttttttatggattattcatctcag 13715193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 284 - 608
Target Start/End: Original strand, 4848480 - 4848802
Alignment:
Q  284 ggtggcatttagcttggacgagttgaagaattggcc-atgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 382  Q
    |||||||||||| |||||| ||||||||||||||   |||||||| |||       |||||||||||||| ||||||| |||||||||||||||||||||    
T  4848480 ggtggcatttagtttggactagttgaagaattggtgtatgatggatcaatttttttaatgtttagattaggcaatccatcaaatcttatcatactctacc 4848579  T
Q  383 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtacnnnnnnnnnnnnnatatcaatactattcaacaactccc 482  Q
    || ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||| |||||||||||||||    
T  4848580 cagactctatctaagccatcaccaactctatctccttcattgctctttctctctcttggtactttttttatttttatatcaatattattcaacaactccc 4848679  T
Q  483 ctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 582  Q
    || |||| |   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4848680 ctgcagttg---cattgaaatggtgatggtttcaaataagcagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 4848776  T
Q  583 ttaagcacatacataagaactttttt 608  Q
    ||||||||||||| ||||||||||||    
T  4848777 ttaagcacatacacaagaactttttt 4848802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 39 - 195
Target Start/End: Complemental strand, 11511316 - 11511160
Alignment:
Q  39 agcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttt 138  Q
    ||||||| |||||  ||||||||| || |||||||||| ||||||| || ||| ||||||||| ||||||||| |||||||||||| |||||||||||||    
T  11511316 agcatgtgtttggtgtagagtttacaacaccaaaagcacggctggcatgattatcaaagcaaaactgccgtgattttattaagctagcatttggagcttt 11511217  T
Q  139 tgtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaa 195  Q
    || |  ||||||||| ||| |||| |||||| ||| || |||||||| |||| ||||    
T  11511216 tgcgccaacgtgataaattgccgtggttttccataaaatgtggtttgacaaacgcaa 11511160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 7068635 - 7068492
Alignment:
Q  54 tagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagct-accatttggagcttttgtgtaaacgtgat 152  Q
    ||||||||| || |||||||||| || ||  ||| ||| ||||||||| |||  |||||||||||||||| | ||||| |||||||||||  ||||||||    
T  7068635 tagagtttacaacaccaaaagcacggttgatgtgattatcaaagcaaaactgttgtgactttattaagcttaacatttagagcttttgtgccaacgtgat 7068536  T
Q  153 acattaccgtagttttctatagaacgtggtttgtcaaaggcaat 196  Q
      ||||||||||||||||||| ||||||||||| |||| |||||    
T  7068535 gaattaccgtagttttctataaaacgtggtttgacaaacgcaat 7068492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 284 - 435
Target Start/End: Original strand, 14659002 - 14659154
Alignment:
Q  284 ggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 382  Q
    |||| |||||||||||||  | |||||||||||| |||||||||| |||       |||||||||||||||| |||||  |||||||||||||||||| |    
T  14659002 ggtgccatttagcttggatcaattgaagaattggtccatgatggatcaatttttttaatgtttagattagactatccatgaaatcttatcatactctatc 14659101  T
Q  383 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctc 435  Q
    |||||   |||| |||||||| |||||||||||| ||||||| ||| ||||||    
T  14659102 cacactaaatcttagccatcatcaactctatctctttcattgttctctctctc 14659154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 284 - 624
Target Start/End: Complemental strand, 45908296 - 45907960
Alignment:
Q  284 ggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 382  Q
    ||||| ||||||||||||| ||||||| |||| | ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  45908296 ggtggtatttagcttggaccagttgaaaaatttgtccatgatggaccaatttttttaatgtttagattagacaatccaccaaatcttatcatactctacc 45908197  T
Q  383 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtacnnnnnnnnnnnnnatatcaatactattcaacaactccc 482  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  45908196 cacaccctatctaagccatcaccaactctatc--cttcattgctctttctctctcttggtacttttttcatttttatatcaatactattcaacaactccc 45908099  T
Q  483 ctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 582  Q
    || ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45908098 ctgcagt---tccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 45908002  T
Q  583 ttaagcacatacataagaacttttttatagattattcatctc 624  Q
    |||||||||| || |||||||||||||| |||||||| ||||    
T  45908001 ttaagcacattcacaagaacttttttatggattattcctctc 45907960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 54103189 - 54103359
Alignment:
Q  40 gcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagctttt 139  Q
    |||||| ||||| |||||||||| || |||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  54103189 gcatgtgtttggtatagagtttacaacaccaaaagcacggctgacgtggttatcaaagcaaaactgccgtgactttattaagctaccatttggagctttt 54103288  T
Q  140 gtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaatgacaaacatgctat 210  Q
    | |  ||||||||||||| |||| |||||||||| ||||||||||| |||| |||||| ||||||||||||    
T  54103289 gcgccaacgtgatacattgccgttgttttctataaaacgtggtttgacaaacgcaatggcaaacatgctat 54103359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 40283744 - 40283671
Alignment:
Q  69 caaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtg 142  Q
    |||||||| |||| ||||| ||| ||||||||| ||  ||||||||||| |||||| | |||||||||||||||    
T  40283744 caaaagcacggcttgcgtgattatcaaagcaaaactatcgtgactttatgaagctagcctttggagcttttgtg 40283671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 458 - 625
Target Start/End: Original strand, 22917219 - 22917379
Alignment:
Q  458 atatcaatactattcaacaactcccctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataatta 557  Q
    ||||||||||||||||||||||||| |   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22917219 atatcaatactattcaacaactcccat---gtagttccattgaaagggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataatta 22917315  T
Q  558 ttatggtcattgattgaaactgatcttaagcacatacataagaacttttttatagattattcatctca 625  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||| |||||    
T  22917316 ttatggtcattgattgaaactgatcttaagc----acataagaacttttttatggattattcctctca 22917379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 291 - 444
Target Start/End: Complemental strand, 4785148 - 4784994
Alignment:
Q  291 tttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccacacct 389  Q
    |||||||||||| |||||||||||||| ||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||      
T  4785148 tttagcttggaccagttgaagaattggtccatgatggaccaatttttttaatgtgtagattagacaatccaccaaatcttatcatactctacccacactc 4785049  T
Q  390 tatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4785048 tatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 4784994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 490 - 626
Target Start/End: Complemental strand, 4784274 - 4784135
Alignment:
Q  490 agttccattgaaatggtgatggtttcaaataagta---gtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaa 586  Q
    ||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784274 agttccattgaaatggtgatggtttcaaacaagtactagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaa 4784175  T
Q  587 gcacatacataagaacttttttatagattattcatctcag 626  Q
    |||||||||  ||||||||||||| |||||||| ||||||    
T  4784174 gcacatacacgagaacttttttatggattattcctctcag 4784135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 283 - 444
Target Start/End: Original strand, 22917026 - 22917186
Alignment:
Q  283 gggtggcatttagcttggacgagttgaagaattggccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttat-------cata 375  Q
    |||||||||||||||||||| ||||||||||||||        ||||||       |||||||||||||||||||||||||||||||||       ||||    
T  22917026 gggtggcatttagcttggaccagttgaagaattgg--------gaccaatttttttaatgtttagattagacaatccaccaaatcttatcagttatcata 22917117  T
Q  376 ctctacccacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 444  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22917118 ctctacccacaccctatctaagccatcaccaactctatctccttccttgctctttctctctcttggtac 22917186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 593
Target Start/End: Complemental strand, 5320185 - 5320150
Alignment:
Q  558 ttatggtcattgattgaaactgatcttaagcacata 593  Q
    |||||||||||||||||||||||||| |||||||||    
T  5320185 ttatggtcattgattgaaactgatctcaagcacata 5320150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 287 - 444
Target Start/End: Complemental strand, 39773853 - 39773695
Alignment:
Q  287 ggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccac 385  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||||       ||||||||||||||||||||||||||||| |||||||||||||||||    
T  39773853 ggcatttagcttggaccagttgaagaattggtccatgatgggccaatttttttaatgtttagattagacaatccaccaaatcatatcatactctacccac 39773754  T
Q  386 accttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 444  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39773753 accctatctaagccatcaccaactctatctccttcattgctctttttctctcttggtac 39773695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 513 - 607
Target Start/End: Complemental strand, 39773650 - 39773556
Alignment:
Q  513 ttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagcacatacataagaacttttt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39773650 ttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagcacatacacaagaacttttt 39773556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 26353504 - 26353346
Alignment:
Q  38 aagcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagctt 137  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||                 
T  26353504 aagcatgtgtttggcatagagtttagaataccaaaagcacggctggcgtggttaccaaagcaaatctgtcgtgactttattaagcta------------- 26353418  T
Q  138 ttgtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaatgacaaacatgcta 209  Q
     ||| ||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  26353417 atgtctaaacctgatatattaccgtggttttctatagaacgtggtttgtcaaacgcaatgacaaacatgcta 26353346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 19138395 - 19138444
Alignment:
Q  93 caaagcaaatctgccgtgactttattaagctaccatttggagcttttgtg 142  Q
    ||||||||| ||||||||| |||||||||||| |||||| ||||||||||    
T  19138395 caaagcaaaactgccgtgattttattaagctagcatttgaagcttttgtg 19138444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 284 - 435
Target Start/End: Original strand, 6127068 - 6127220
Alignment:
Q  284 ggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 382  Q
    |||| |||||||||| ||  | |||||||||||| ||||||||||||||       |||||||||||||||| ||||| |||||||||||||| |||| |    
T  6127068 ggtgtcatttagcttagatcaattgaagaattggtccatgatggaccaatttttttaatgtttagattagactatccatcaaatcttatcatattctatc 6127167  T
Q  383 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctc 435  Q
    |||||   |||| |||||||| |||||||||||| ||||||| ||| ||||||    
T  6127168 cacactaaatcttagccatcatcaactctatctctttcattgttctctctctc 6127220  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 339 - 433
Target Start/End: Original strand, 44398274 - 44398368
Alignment:
Q  339 aatgtttagattagacaatccaccaaatcttatcatactctacccacaccttatctaagccatcaccaactctatctccttcattgctctttctc 433  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||||   |||| |||||| |||||||||||||| ||||||| ||| ||||    
T  44398274 aatgtttagattagactatccatcaaatcttatcatactctatccacactaaatcttagccattaccaactctatctctttcattgttctctctc 44398368  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 289 - 424
Target Start/End: Original strand, 43810833 - 43810969
Alignment:
Q  289 catttagcttggacgagttgaagaattggcc-atgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccacac 387  Q
    |||||||||||||| | ||||| ||||||   ||||||||||||       ||| |||||||||||| ||||| |||||||||||  |||||| ||||||    
T  43810833 catttagcttggaccaattgaataattggtttatgatggaccaatttttttaatatttagattagactatccatcaaatcttatcgaactctatccacac 43810932  T
Q  388 cttatctaagccatcaccaactctatctccttcattg 424  Q
       |||| ||||||||||||||||||||| |||||||    
T  43810933 taaatcttagccatcaccaactctatctctttcattg 43810969  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 36686712 - 36686618
Alignment:
Q  47 tttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgt 141  Q
    ||||| |||||||||| ||| |||||||||||| ||||||| ||| ||||||||| || |  ||||||||| |||||| | ||| ||||||||||    
T  36686712 tttggtatagagtttacaatcccaaaagcatggttggcgtgattatcaaagcaaaactacaatgactttatgaagctaacctttagagcttttgt 36686618  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 23015165 - 23015238
Alignment:
Q  69 caaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtg 142  Q
    |||||| | |||||||||| ||| ||||||||| || |  ||||||||| |||||| | |||||||||||||||    
T  23015165 caaaagtacggctggcgtgattatcaaagcaaaactacaatgactttatgaagctagcctttggagcttttgtg 23015238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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