View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17636_low_5 (Length: 429)
Name: NF17636_low_5
Description: NF17636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17636_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 37488819 - 37488534
Alignment:
| Q |
7 |
gagatgaaaaacagagtgatatagacatataaataaaataccaaaataagttcagtagaagaatgtctttcagttacaatgacagcatatcaattgtatc |
106 |
Q |
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| T |
37488819 |
gagatgaaaaacagagtgatatagacatataaataaaataccaaaataagttcagtagaagaatgtctttcagttacaatgacagcatatcaattgtatc |
37488720 |
T |
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| Q |
107 |
taaaacagnnnnnnnnnntcagtgttgtatttccaaaaggctaactctagtgaagtcagcaggaaaaaccacaatttccaaatgaagtgcagcaagaagc |
206 |
Q |
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| T |
37488719 |
taaaaca-aaaaaaaaaatcagtgttgtatttccaaaaggctaactctagtgaagtcagcaggaaaaaccacaatttccaaatgaagtgcagcaaaaagc |
37488621 |
T |
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| Q |
207 |
agtgtgttagaaaatgataatacaactgatccacaatttccaaatgatgtttttatcaacatactctactctaatatcttatctttg |
293 |
Q |
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| T |
37488620 |
agtgtgttagaaaatgataatacaactgatccacaatttccaaatgatgtttttataaacatactctactctaatatcttatctttg |
37488534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 279 - 429
Target Start/End: Complemental strand, 37488403 - 37488253
Alignment:
| Q |
279 |
aatatcttatctttggatttaggcttggaaacttctatttgacataattgtaaaatggctgaagcttattataaataccataatcaaatataattaattt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37488403 |
aatatcttatctttggatttaggcttggaaacttctatttgacataattgtaaaatggctgaagcttattataaataccaaaatcaaatataattaattt |
37488304 |
T |
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| Q |
379 |
taaaggaactgtaaactaatctccaagcatattgaaagcatgcgtaagatt |
429 |
Q |
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| T |
37488303 |
taaaggaactgtaaactaatctccaagcatattgaaagcatgcataagatt |
37488253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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