View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17637_high_4 (Length: 404)
Name: NF17637_high_4
Description: NF17637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17637_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 44313877 - 44313490
Alignment:
| Q |
1 |
ttgtgtcttatgagacctaatttaacgttttccttgatgctttatttaatattccttgctgaatagataagtattaatgttagactattatatgaatgat |
100 |
Q |
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| T |
44313877 |
ttgtgtcttatgagacctaatttaacgttttccttgatgctttatttaatattccttgctgaatagataagtattaatgttagactattatatgaatgat |
44313778 |
T |
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| Q |
101 |
gcttttcaacatgtggggtttgtatgaattaaaataaaatgatttcatctttggcagagagactaaaagttttacagaaatactttctttagccattggt |
200 |
Q |
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| T |
44313777 |
gcttttcaacatgtggggtttgtatgaattaaaataaaatgatttcatctttggcagagagactaaaagttctacagaaatactttctttagccattggt |
44313678 |
T |
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| Q |
201 |
tctttaggctcatggtagaaaagatattgttctttggaaaacatggatagcatatgataaaatcaatgatagtgtttgaacgttgcaaatttgcaatctt |
300 |
Q |
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| T |
44313677 |
tctttaggctcatggtagaaaagatattgttctttggaaaacatggatagcatatgataaaatcaatgatagtgtttgaacgttgcaaatttgcaatctt |
44313578 |
T |
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| Q |
301 |
aattgtggtccaatttacatatgcggatataaagtgcaagtacaagtggttcaagaatatggttgttaagcatcttcatccaaaggta |
388 |
Q |
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| T |
44313577 |
aattgtggtccaatttacatatgcggatataaagtgcaagaacaagtggttcaagaatatggttgttaagcatcttcatccaaaggta |
44313490 |
T |
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