View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17637_high_8 (Length: 309)

Name: NF17637_high_8
Description: NF17637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17637_high_8
NF17637_high_8
[»] chr6 (6 HSPs)
chr6 (1-179)||(11644626-11644805)
chr6 (235-288)||(6725626-6725679)
chr6 (235-288)||(29428519-29428572)
chr6 (235-295)||(6380483-6380543)
chr6 (209-290)||(631509-631591)
chr6 (209-288)||(34328272-34328352)
[»] chr5 (12 HSPs)
chr5 (178-295)||(8176297-8176414)
chr5 (176-295)||(41263320-41263439)
chr5 (235-295)||(4577022-4577082)
chr5 (237-293)||(41153002-41153058)
chr5 (235-288)||(10569811-10569864)
chr5 (236-289)||(25032371-25032424)
chr5 (235-295)||(14278846-14278906)
chr5 (236-295)||(8681282-8681341)
chr5 (238-294)||(12912890-12912946)
chr5 (188-290)||(27942461-27942564)
chr5 (235-290)||(31013842-31013898)
chr5 (236-295)||(34918472-34918529)
[»] chr7 (12 HSPs)
chr7 (175-295)||(22737589-22737709)
chr7 (236-295)||(22191239-22191298)
chr7 (203-288)||(24793477-24793562)
chr7 (235-288)||(43571095-43571148)
chr7 (236-295)||(21654865-21654924)
chr7 (236-295)||(25218802-25218861)
chr7 (188-290)||(36518486-36518589)
chr7 (203-295)||(38970017-38970111)
chr7 (235-288)||(30630815-30630868)
chr7 (236-288)||(26013200-26013251)
chr7 (235-295)||(35193113-35193173)
chr7 (235-290)||(40302489-40302545)
[»] chr3 (26 HSPs)
chr3 (203-295)||(42601748-42601840)
chr3 (175-295)||(46572919-46573039)
chr3 (235-295)||(41890553-41890613)
chr3 (235-295)||(42601499-42601559)
chr3 (235-291)||(49147286-49147342)
chr3 (235-295)||(49823164-49823224)
chr3 (235-295)||(51427119-51427179)
chr3 (235-294)||(35424004-35424063)
chr3 (235-288)||(35853193-35853246)
chr3 (235-288)||(43022667-43022720)
chr3 (235-288)||(49710390-49710443)
chr3 (201-289)||(25832724-25832811)
chr3 (235-295)||(33935010-33935070)
chr3 (236-295)||(33748705-33748764)
chr3 (245-295)||(49357491-49357541)
chr3 (235-295)||(138994-139055)
chr3 (235-295)||(28410413-28410473)
chr3 (235-295)||(37410413-37410473)
chr3 (248-288)||(50033699-50033739)
chr3 (237-295)||(20139381-20139440)
chr3 (209-290)||(25790773-25790855)
chr3 (188-289)||(29701654-29701756)
chr3 (235-289)||(50017072-50017126)
chr3 (209-288)||(5845140-5845220)
chr3 (235-290)||(41183293-41183349)
chr3 (237-288)||(47701063-47701115)
[»] chr8 (16 HSPs)
chr8 (176-295)||(36912375-36912494)
chr8 (178-295)||(18029493-18029610)
chr8 (202-295)||(8609975-8610068)
chr8 (235-295)||(5212308-5212368)
chr8 (176-288)||(26632154-26632266)
chr8 (235-295)||(34955660-34955720)
chr8 (203-295)||(41477168-41477260)
chr8 (203-287)||(4625496-4625580)
chr8 (201-289)||(38584894-38584982)
chr8 (240-295)||(39811052-39811107)
chr8 (178-288)||(30470819-30470929)
chr8 (235-295)||(17741729-17741789)
chr8 (236-295)||(13814965-13815024)
chr8 (237-295)||(7990450-7990508)
chr8 (237-289)||(26749408-26749460)
chr8 (235-287)||(42860731-42860783)
[»] chr2 (12 HSPs)
chr2 (178-295)||(37245463-37245580)
chr2 (235-295)||(9074219-9074279)
chr2 (235-288)||(927893-927946)
chr2 (235-295)||(36855768-36855828)
chr2 (236-295)||(31192978-31193037)
chr2 (237-295)||(1987140-1987198)
chr2 (238-295)||(38901742-38901799)
chr2 (201-295)||(13151478-13151573)
chr2 (209-290)||(12855012-12855094)
chr2 (209-290)||(24997073-24997155)
chr2 (209-290)||(30822582-30822664)
chr2 (201-289)||(14152067-14152156)
[»] chr1 (9 HSPs)
chr1 (174-295)||(44651028-44651148)
chr1 (235-295)||(44451264-44451324)
chr1 (235-294)||(643817-643876)
chr1 (209-290)||(45239127-45239209)
chr1 (235-290)||(14096706-14096762)
chr1 (235-295)||(20584845-20584905)
chr1 (209-288)||(27630460-27630540)
chr1 (209-288)||(37420344-37420424)
chr1 (235-290)||(48404345-48404401)
[»] scaffold0100 (1 HSPs)
scaffold0100 (179-288)||(30539-30648)
[»] chr4 (10 HSPs)
chr4 (235-287)||(12158156-12158208)
chr4 (236-295)||(31848768-31848827)
chr4 (235-289)||(39113755-39113809)
chr4 (201-295)||(47750219-47750312)
chr4 (188-290)||(6290571-6290674)
chr4 (236-295)||(39049077-39049136)
chr4 (253-295)||(10089883-10089925)
chr4 (189-290)||(40721007-40721109)
chr4 (235-288)||(54356897-54356950)
chr4 (235-290)||(38173573-38173629)
[»] scaffold0012 (1 HSPs)
scaffold0012 (203-295)||(124001-124091)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 11644805 - 11644626
Alignment:
Q  1 agctaaccaaatgagaaacttgatctttttcggcagcagtaattttcaaatacaagaccaagagaaagagggattataattgttaactaggt-ccatacg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  11644805 agctaaccaaatgagaaacttgatctttttcggcagcagtaattttcaaatccaagaccaagagaaagagggattagaattgttaactgggttccatacg 11644706  T
Q  100 agataggagccaagaatatcaagtcttggtggaataggagccaatttttattgtttttgcaaaagaaagcatcttctaag 179  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11644705 agattggagccaagaatatcaagtcttggtggaataggagccaatttttattgtttttgcaaatgaaagcatcttctaag 11644626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 6725679 - 6725626
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||    
T  6725679 cccaacactccacatcattttctctctcttattcaacactcattcaacttttac 6725626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 29428572 - 29428519
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||    
T  29428572 cccaacactccacatcattttctctctcttattcaacactcattcaacttttac 29428519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 6380543 - 6380483
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||| ||| ||||||||||| |||||    
T  6380543 cccaacactccacatcattttctctctcttattcaacacacattcaacttttaccctctcc 6380483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 631509 - 631591
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  631509 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttcattcaacactcattcaatttttacct 631591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 34328272 - 34328352
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttac 288  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||    
T  34328272 accattcaacacccactttttcaattcccaacactccacatcattttatctctcttaattcaacactcattcaatttttac 34328352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 295
Target Start/End: Complemental strand, 8176414 - 8176297
Alignment:
Q  178 agaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcat 277  Q
    |||||| ||||||||||  || |||||||||| ||||||||||||||    ||||  |||||||||||| |||||||| |||||||||| ||||||||||    
T  8176414 agaccatccccaatggttcaacacattcaacatcattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaacactcat 8176315  T
Q  278 acaacttttaccttctcc 295  Q
     ||||||||||| |||||    
T  8176314 tcaacttttaccctctcc 8176297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 295
Target Start/End: Original strand, 41263320 - 41263439
Alignment:
Q  176 taagaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactc 275  Q
    |||||||| ||||||||||  || |||||||||||||||||||| ||||    ||||  |||||| ||||| |||||||| |||||||||| ||||| ||    
T  41263320 taagaccatccccaatggttcaacacattcaacaccattcaacatccactttttcaattcccaacgctccacatcattttctctctcttattcaacattc 41263419  T
Q  276 atacaacttttaccttctcc 295  Q
    || ||||||||||| |||||    
T  41263420 attcaacttttaccctctcc 41263439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 4577022 - 4577082
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  4577022 cccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctcc 4577082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 41153058 - 41153002
Alignment:
Q  237 caacactccatatcattttttctctcttatacaacactcatacaacttttaccttct 293  Q
    |||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||    
T  41153058 caacactccacatcattttctctctcttattcaacactcattcaacttttaccttct 41153002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 10569864 - 10569811
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| |||||||||| |||||||| |||||||||| ||||||||||    
T  10569864 cccaacactccacatcattttttgtctcttattcaacactcattcaacttttac 10569811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 25032371 - 25032424
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttacc 289  Q
    ||||||||||| |||||||| |||||||||| |||||||||| |||||||||||    
T  25032371 ccaacactccacatcattttctctctcttattcaacactcattcaacttttacc 25032424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 14278846 - 14278906
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| ||||| |||| ||||||||||| |||||    
T  14278846 cccaacactccacatcattttctctctcttattcaacattcattcaacttttaccctctcc 14278906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 8681341 - 8681282
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||||||||||| ||| |||||| ||||| |||| ||||||||||| |||||    
T  8681341 ccaacactccatatcattttctctttcttattcaacattcattcaacttttaccctctcc 8681282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 12912890 - 12912946
Alignment:
Q  238 aacactccatatcattttttctctcttatacaacactcatacaacttttaccttctc 294  Q
    ||||||||| |||||||| ||||||||||  ||||||||| ||||||||||| ||||    
T  12912890 aacactccacatcattttatctctcttatttaacactcattcaacttttaccctctc 12912946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 27942461 - 27942564
Alignment:
Q  188 caatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaactttt 286  Q
    |||||||| || |||||||||| | ||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||| ||| ||| ||||    
T  27942461 caatggtaaaatacattcaacaaccttcaacacccactttttcaatccccaacactccacatcattttctctctcttaattcaacacccattcaattttt 27942560  T
Q  287 acct 290  Q
    ||||    
T  27942561 acct 27942564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 31013898 - 31013842
Alignment:
Q  235 cccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  31013898 cccaacactccacatcattttctctctcttaattcaacactcattcaatttttacct 31013842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 34918529 - 34918472
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||| ||||||||  || |||||| |||||||||| ||||||||||| |||||    
T  34918529 ccaacactccacatcatttt--ctttcttattcaacactcattcaacttttaccctctcc 34918472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 295
Target Start/End: Complemental strand, 22737709 - 22737589
Alignment:
Q  175 ctaagaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacact 274  Q
    ||||||||| ||||||||||  || | |||||||| ||||||||||||||    ||||  |||||||||||| |||||||| |||||||||| ||||| |    
T  22737709 ctaagaccatccccaatggttcaacatattcaacagcattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaacatt 22737610  T
Q  275 catacaacttttaccttctcc 295  Q
    ||| |||||||||||||||||    
T  22737609 cattcaacttttaccttctcc 22737589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 22191239 - 22191298
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  22191239 ccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctcc 22191298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 24793477 - 24793562
Alignment:
Q  203 ttcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||||||||||| |    ||||  |||||||||||| |||||||| ||| |||||| |||||||||| ||||||||||    
T  24793477 ttcaacaccattcaacaccccctttttcaagtcccaacactccaaatcattttctctttcttattcaacactcattcaacttttac 24793562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 43571148 - 43571095
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||    
T  43571148 cccaacactccacatcattttctctctcttattcaacactcattcaacttttac 43571095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 21654865 - 21654924
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||| |||||||| |||||||||| |||||||||| |||| |||||| |||||    
T  21654865 ccaacactccacatcattttctctctcttattcaacactcattcaacatttaccctctcc 21654924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 25218861 - 25218802
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||| ||||||||||| |||||||||| ||| ||||||  |||||||||| |||||    
T  25218861 ccaacacttcatatcattttctctctcttattcaatactcatttaacttttaccctctcc 25218802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 36518486 - 36518589
Alignment:
Q  188 caatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaactttt 286  Q
    |||||||| || |||||||| | | ||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||    
T  36518486 caatggtaaaatacattcaataaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacactcattcaattttt 36518585  T
Q  287 acct 290  Q
    ||||    
T  36518586 acct 36518589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 38970017 - 38970111
Alignment:
Q  203 ttcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttct--ctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||| ||||||||||||    ||||   ||||||||||| |||||||||| |  ||||||| |||||||||| ||||||||||| |||||    
T  38970017 ttcaacacctttcaacacccactttttcaatttccaacactccacatcatttttttttcctcttattcaacactcattcaacttttaccgtctcc 38970111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 30630868 - 30630815
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| || ||||| |||||||||| ||| |||||| ||||||||||    
T  30630868 cccaacactccacattattttctctctcttattcaatactcattcaacttttac 30630815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 26013251 - 26013200
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||||||||||| |||||||| | ||| |||||| ||||||||||    
T  26013251 ccaacactccatatcattttctctctctt-ttcaatactcattcaacttttac 26013200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 35193173 - 35193113
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| || ||||| | ||| |||| |||||||||| ||||||||||| |||||    
T  35193173 cccaacactccacataattttctttctattattcaacactcattcaacttttaccatctcc 35193113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 40302545 - 40302489
Alignment:
Q  235 cccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  40302545 cccaacactccacatcattttctctctcttaattcaacactcattcaatttttacct 40302489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 42601748 - 42601840
Alignment:
Q  203 ttcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||||||||||||||    ||||  |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||    
T  42601748 ttcaacaccattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaacactcattcaacttttaccttctcc 42601840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 295
Target Start/End: Complemental strand, 46573039 - 46572919
Alignment:
Q  175 ctaagaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacact 274  Q
    ||||||||| |  |||||||  || |||||||||| ||||||||||||||    ||||  |||||||||||| |||||||| |||||||||| ||| |||    
T  46573039 ctaagaccatctacaatggtgaaaaacattcaacaacattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaagact 46572940  T
Q  275 catacaacttttaccttctcc 295  Q
    ||| ||||||||||| |||||    
T  46572939 cattcaacttttaccctctcc 46572919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 41890553 - 41890613
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  41890553 cccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctcc 41890613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 42601559 - 42601499
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  42601559 cccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctcc 42601499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 49147342 - 49147286
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttacctt 291  Q
    |||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||    
T  49147342 cccaacactccacatcattttctctctcttattcaacactcattcaacttttacctt 49147286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 49823224 - 49823164
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  49823224 cccaacactccacatcattttctctctcttattcaacactcattcaacttttaccatctcc 49823164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 51427119 - 51427179
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  51427119 cccaacactccacatcattttctctctcttattcaacactcattcaacttttaccatctcc 51427179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 35424063 - 35424004
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctc 294  Q
    |||||||||||| ||||||||||||||||||| |||||||||| | ||||||||| ||||    
T  35424063 cccaacactccacatcattttttctctcttattcaacactcattcgacttttaccctctc 35424004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 35853246 - 35853193
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||    
T  35853246 cccaacactccacatcattttctctctcttattcaacactcattcaacttttac 35853193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 43022667 - 43022720
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||    
T  43022667 cccaacactccacatcattttctctctcttattcaacactcattcaacttttac 43022720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 49710443 - 49710390
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||    
T  49710443 cccaacactccacatcattttctctctcttattcaacactcattcaacttttac 49710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 25832811 - 25832724
Alignment:
Q  201 cattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcatacaacttttacc 289  Q
    ||||||||||||||||||||| ||    ||||  ||||||||| || |||||||| |||||||||| |||||||||| |||||||||||    
T  25832811 cattcaacaccattcaacacc-actttttcaattcccaacacttcacatcattttctctctcttattcaacactcattcaacttttacc 25832724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 33935010 - 33935070
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||  ||||||||||| |||||    
T  33935010 cccaacactccacatcattttctctctcttattcaacactcaatcaacttttaccctctcc 33935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 33748705 - 33748764
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||| |||||||| ||||| |||  |||||||||| |||||||||||||||||    
T  33748705 ccaacactccacatcattttctctcttttactcaacactcattcaacttttaccttctcc 33748764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 49357541 - 49357491
Alignment:
Q  245 catatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  49357541 catatcattttctctctcttattcaacactcattcaacttttaccctctcc 49357491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 138994 - 139055
Alignment:
Q  235 cccaacactccatatcattttttctctctt-atacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||| || |||||||||| ||||||||||| |||||    
T  138994 cccaacactccacatcattttgtctctcttaattcaacactcattcaacttttaccctctcc 139055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 28410413 - 28410473
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||||  ||||||| ||||| |||| |||||||||| ||||||||||| |||||    
T  28410413 cccaacactccacgtcattttctctcttttattcaacactcattcaacttttaccatctcc 28410473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 37410473 - 37410413
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||| |||||| |||||||| |||||||||| ||||| |||| ||||||||||| |||||    
T  37410473 cccaatactccacatcattttctctctcttattcaacattcattcaacttttaccctctcc 37410413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 50033699 - 50033739
Alignment:
Q  248 atcattttttctctcttatacaacactcatacaacttttac 288  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  50033699 atcattttttctctcttattcaacactcattcaacttttac 50033739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 20139381 - 20139440
Alignment:
Q  237 caacactccatatcattttttctctctta-tacaacactcatacaacttttaccttctcc 295  Q
    ||||||| || |||||||| ||||||||| | |||||||||| |||||||||||||||||    
T  20139381 caacacttcacatcattttctctctcttaattcaacactcattcaacttttaccttctcc 20139440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 25790855 - 25790773
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  25790855 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttcattcaacactcattcaatttttacct 25790773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 29701654 - 29701756
Alignment:
Q  188 caatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaactttt 286  Q
    |||||||| || |||||||||| | ||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||| ||| ||| ||||    
T  29701654 caatggtaaaatacattcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaattttt 29701753  T
Q  287 acc 289  Q
    |||    
T  29701754 acc 29701756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 50017072 - 50017126
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttacc 289  Q
    |||||||||| | |||||||| ||| |||||| |||||||||| |||||||||||    
T  50017072 cccaacactctacatcattttctctttcttattcaacactcattcaacttttacc 50017126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 5845220 - 5845140
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttac 288  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||    
T  5845220 accattcaacacccactttttcaattcccaacactccacatcattttatctctcttaattcaacactcattcaatttttac 5845140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 41183293 - 41183349
Alignment:
Q  235 cccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||| ||||||||    
T  41183293 cccaacactccacatcattttctctctcttaattcaacacccatacaatttttacct 41183349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 47701115 - 47701063
Alignment:
Q  237 caacactccatatcatttttt-ctctcttatacaacactcatacaacttttac 288  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||||||||    
T  47701115 caacactccacatcatttttttctctcttattcaacactcattaaacttttac 47701063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 176 - 295
Target Start/End: Original strand, 36912375 - 36912494
Alignment:
Q  176 taagaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactc 275  Q
    |||||||| ||||||||||  || | |||||||||||||||||||||||    ||||  |||||||||| | |||||||| |||||||||| ||||||||    
T  36912375 taagaccatccccaatggttcaacatattcaacaccattcaacacccactttttcaattcccaacactctacatcattttctctctcttattcaacactc 36912474  T
Q  276 atacaacttttaccttctcc 295  Q
    || ||||||||||| |||||    
T  36912475 attcaacttttaccctctcc 36912494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 295
Target Start/End: Complemental strand, 18029610 - 18029493
Alignment:
Q  178 agaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcat 277  Q
    |||||| | ||||||||  || |||||||||||||||| ||||||||    ||||  |||||||||||| |||||||| |||||||||| ||||||||||    
T  18029610 agaccatctccaatggttcaacacattcaacaccattcgacacccactttttcaattcccaacactccacatcattttctctctcttattcaacactcat 18029511  T
Q  278 acaacttttaccttctcc 295  Q
     ||||||||||| |||||    
T  18029510 tcaacttttaccctctcc 18029493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 295
Target Start/End: Complemental strand, 8610068 - 8609975
Alignment:
Q  202 attcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||||||||||  |||    ||||  ||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||| |||||    
T  8610068 attcaacaccattcaacattcactttttcaattcccaacactccatatcattttctctcttttattcaacactcattcaacttttaccctctcc 8609975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 5212308 - 5212368
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  5212308 cccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctcc 5212368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 26632266 - 26632154
Alignment:
Q  176 taagaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactc 275  Q
    |||||||| || ||||||| ||   ||||||||||||||||||||||||    ||||  |||||||| |||  ||||||| |||||||||| ||||||||    
T  26632266 taagaccatcctcaatggtttacaccattcaacaccattcaacacccactttttcaattcccaacacgccacgtcattttctctctcttattcaacactc 26632167  T
Q  276 atacaacttttac 288  Q
    || ||||||||||    
T  26632166 attcaacttttac 26632154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 34955720 - 34955660
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  34955720 cccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctcc 34955660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 41477168 - 41477260
Alignment:
Q  203 ttcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||||||||| ||||    ||||  ||||||||||||  ||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  41477168 ttcaacaccattcaacatccactttttcaattcccaacactccacgtcattttctctctcttattcaacactcattcaacttttaccatctcc 41477260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 4625580 - 4625496
Alignment:
Q  203 ttcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcatacaactttta 287  Q
    |||||||||||||||||| |||    ||||  |||||||||||| || ||||| |||||||||| |||||||||| |||||||||    
T  4625580 ttcaacaccattcaacactcactttttcaattcccaacactccaaattattttctctctcttattcaacactcattcaactttta 4625496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 38584982 - 38584894
Alignment:
Q  201 cattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcatacaacttttacc 289  Q
    |||||||||||||||||||| |||    ||||  ||||||||||||  ||||||| |||||||||| |||||||| | |||||||||||    
T  38584982 cattcaacaccattcaacacacactttttcaattcccaacactccacgtcattttctctctcttattcaacactcgttcaacttttacc 38584894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 39811107 - 39811052
Alignment:
Q  240 cactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  39811107 cactccacatcattttatctctcttattcaacactcattcaacttttaccctctcc 39811052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 288
Target Start/End: Complemental strand, 30470929 - 30470819
Alignment:
Q  178 agaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcat 277  Q
    |||||| |||||||||| ||   ||||||||||||||||| | |||     ||||  ||||||||||||  ||||||| |||||||||| ||||||||||    
T  30470929 agaccatccccaatggtttacaccattcaacaccattcaagatccattttttcaattcccaacactccacgtcattttctctctcttattcaacactcat 30470830  T
Q  278 acaacttttac 288  Q
     ||||||||||    
T  30470829 tcaacttttac 30470819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 17741729 - 17741789
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||| |||||| |||||||| |||||||||| ||| |||||| ||||||||||| |||||    
T  17741729 cccaagactccacatcattttctctctcttattcaatactcattcaacttttaccctctcc 17741789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 13814965 - 13815024
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||| |||||||| |||||||||| ||||||| || |||| |||||| |||||    
T  13814965 ccaacactccacatcattttctctctcttattcaacactaattcaacatttaccctctcc 13815024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 7990450 - 7990508
Alignment:
Q  237 caacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||  | ||||||| |||||||| |||||||||| ||||||||||| |||||    
T  7990450 caacactccacgttattttttttctcttattcaacactcattcaacttttaccctctcc 7990508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 26749460 - 26749408
Alignment:
Q  237 caacactccatatcattttttctctcttatacaacactcatacaacttttacc 289  Q
    ||||||||||||||||||| || || |||| ||||| |||| |||||||||||    
T  26749460 caacactccatatcattttctcccttttattcaacattcattcaacttttacc 26749408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 42860731 - 42860783
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaactttta 287  Q
    |||||||||||| |||||||| ||| |||||| |||||||||| |||| ||||    
T  42860731 cccaacactccacatcattttctctttcttattcaacactcattcaacattta 42860783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 37245463 - 37245580
Alignment:
Q  178 agaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcat 277  Q
    |||||| ||||||||||  || | ||| |||||||||||||||||||    ||||  |||||||||||| |||||||| |||||||||| ||||||||||    
T  37245463 agaccatccccaatggttcaacatatttaacaccattcaacacccactttttcaattcccaacactccacatcattttctctctcttattcaacactcat 37245562  T
Q  278 acaacttttaccttctcc 295  Q
     ||||||||||| |||||    
T  37245563 tcaacttttaccctctcc 37245580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 9074279 - 9074219
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  9074279 cccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctcc 9074219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 927946 - 927893
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||    
T  927946 cccaacactccacatcattttctctctcttattcaacactcattcaacttttac 927893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 36855828 - 36855768
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||  || |||||||||||||||| |||||||||| ||||||||||| |||||    
T  36855828 cccaacactccccattattttttctctcttattcaacactcattcaacttttaccctctcc 36855768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 31193037 - 31192978
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||| |||||||| |||||||||| ||| |||||| ||||||||||| |||||    
T  31193037 ccaacactccacatcattttctctctcttattcaatactcattcaacttttaccctctcc 31192978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 1987140 - 1987198
Alignment:
Q  237 caacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||| |||||||| | |||||||| |||||||||| ||||||||||| |||||    
T  1987140 caacactccacatcattttctatctcttattcaacactcattcaacttttaccctctcc 1987198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 38901742 - 38901799
Alignment:
Q  238 aacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||||||||||| |||||    
T  38901742 aacactccacatcattttctctctcttattcaacactcgttcaacttttaccctctcc 38901799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 13151573 - 13151478
Alignment:
Q  201 cattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctta-tacaacactcatacaacttttaccttctcc 295  Q
    ||||||||| ||||||||||||||    ||||  ||||||||| || || ||||||| ||||||| | |||||||||| ||||||||||| |||||    
T  13151573 cattcaacaacattcaacacccactttttcaattcccaacactgcacataattttttttctcttaattcaacactcattcaacttttaccctctcc 13151478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 12855012 - 12855094
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  12855012 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttcattcaacactcattcaatttttacct 12855094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 24997073 - 24997155
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  24997073 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacactcattcaatttttacct 24997155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 30822664 - 30822582
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  30822664 accattcaacacccactttttcaattcccaacactccacatcattttctctctcttcattcaacactcattcaatttttacct 30822582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 14152156 - 14152067
Alignment:
Q  201 cattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttacc 289  Q
    ||||||||| ||||||||||||||    ||||  |||||||||||| |||||||| ||||| || || |||||| ||| |||||||||||    
T  14152156 cattcaacaacattcaacacccactttttcaattcccaacactccacatcattttctctcttttaattcaacacccattcaacttttacc 14152067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 295
Target Start/End: Original strand, 44651028 - 44651148
Alignment:
Q  174 tctaagaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacac 273  Q
    |||||||||| |||||||||| |    | ||||||||||||||||||| ||    ||||  |||||||||||| |||||||| |||||||||| ||||||    
T  44651028 tctaagaccatccccaatggtttttttctttcaacaccattcaacacc-actttttcaattcccaacactccacatcattttctctctcttattcaacac 44651126  T
Q  274 tcatacaacttttaccttctcc 295  Q
    |||| ||||||||||| |||||    
T  44651127 tcattcaacttttaccctctcc 44651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 44451324 - 44451264
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  44451324 cccaacactccacatcattttctctctcttattcaacactcattcaacttttaccctctcc 44451264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 643876 - 643817
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctc 294  Q
    ||||||||||||  ||||||| |||||||||| |||||||||| |||| |||||| ||||    
T  643876 cccaacactccacgtcattttctctctcttattcaacactcattcaacatttaccctctc 643817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 45239127 - 45239209
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctc-ttatacaacactcatacaacttttacct 290  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||| |||| |||||||||| ||| ||||||||    
T  45239127 accattcaacacccactttttcaattcccaacactccacatcattttctctctctttattcaacactcattcaatttttacct 45239209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 14096706 - 14096762
Alignment:
Q  235 cccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  14096706 cccaacactccaaatcattttatctctcttaattcaacactcattcaatttttacct 14096762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 20584905 - 20584845
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||| |||||||| || |||||||  |||||| || ||||||||| |||||||    
T  20584905 cccaacactccacatcattttctcactcttatttaacacttattcaacttttatcttctcc 20584845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 27630540 - 27630460
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttac 288  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||    
T  27630540 accattcaacacccactttttcaattcccaacactccacatcattttatctctcttaattcaacactcattcaatttttac 27630460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 37420424 - 37420344
Alignment:
Q  209 accattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaacttttac 288  Q
    ||||||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||    
T  37420424 accattcaacacccactttttcaattcccaacactccacatcattttatctctcttaattcaacactcattcaatttttac 37420344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 48404345 - 48404401
Alignment:
Q  235 cccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  48404345 cccaacactccacatcattttctctctcttaattcaacactcattcaatttttacct 48404401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 288
Target Start/End: Complemental strand, 30648 - 30539
Alignment:
Q  179 gaccagccccaatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcata 278  Q
    ||||| ||||||||||  ||  ||||||||||||||||||| ||||    ||||  | ||||||||||||| ||||| |||||||||| ||||||| ||     
T  30648 gaccatccccaatggttaaacccattcaacaccattcaacatccactttttcaattctcaacactccatataattttctctctcttattcaacacttatt 30549  T
Q  279 caacttttac 288  Q
    ||||||||||    
T  30548 caacttttac 30539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 12158156 - 12158208
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaactttta 287  Q
    |||||||||||| |||||||| |||||||||| |||||||||| |||||||||    
T  12158156 cccaacactccacatcattttctctctcttattcaacactcattcaactttta 12158208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 31848827 - 31848768
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||| |||||||| |||||||||| |||||||||| |||| |||||| |||||    
T  31848827 ccaacactccacatcattttctctctcttattcaacactcattcaacatttaccctctcc 31848768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 39113809 - 39113755
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttacc 289  Q
    |||||||||||| |||||||| ||||| |||| |||||||||| |||||||||||    
T  39113809 cccaacactccacatcattttctctcttttattcaacactcattcaacttttacc 39113755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 47750312 - 47750219
Alignment:
Q  201 cattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||||||||||| ||||    ||||  |||| |||||||  ||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  47750312 cattcaacaccattcaacatccactttttcaattccca-cactccacgtcattttctctctcttattcaacactcattcaacttttaccctctcc 47750219  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 6290571 - 6290674
Alignment:
Q  188 caatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaactttt 286  Q
    |||||||| || |||||||||| | ||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||| ||| ||| ||||    
T  6290571 caatggtaaaatacattcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaattttt 6290670  T
Q  287 acct 290  Q
    ||||    
T  6290671 acct 6290674  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 39049136 - 39049077
Alignment:
Q  236 ccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||| |||||||| ||| |||||| ||||| |||| ||||||||||| |||||    
T  39049136 ccaacactccacatcattttctctttcttattcaacattcattcaacttttaccctctcc 39049077  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 10089883 - 10089925
Alignment:
Q  253 tttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    |||||||||||||| |||||||||| ||||||||||| |||||    
T  10089883 tttttctctcttattcaacactcattcaacttttaccctctcc 10089925  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 40721007 - 40721109
Alignment:
Q  189 aatggtataagacattcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctctt-atacaacactcatacaactttta 287  Q
    ||||||| || ||||||||||  |||||||||||||    ||||  |||||||||||| |||||||| |||||||| || |||||| ||| ||| |||||    
T  40721007 aatggtaaaatacattcaacaatattcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcaattttta 40721106  T
Q  288 cct 290  Q
    |||    
T  40721107 cct 40721109  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 54356950 - 54356897
Alignment:
Q  235 cccaacactccatatcattttttctctcttatacaacactcatacaacttttac 288  Q
    |||||||||||| |||||||| | |||||||| |||||| ||| ||||||||||    
T  54356950 cccaacactccacatcattttctttctcttattcaacacacattcaacttttac 54356897  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 38173573 - 38173629
Alignment:
Q  235 cccaacactccatatcattttttctctctt-atacaacactcatacaacttttacct 290  Q
    |||||||||||| |||||||| |||||||| || |||||||||| ||| ||||||||    
T  38173573 cccaacactccacatcattttctctctcttaattcaacactcatccaatttttacct 38173629  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 124001 - 124091
Alignment:
Q  203 ttcaacaccattcaacacccacgaagtcaaagcccaacactccatatcattttttctctcttatacaacactcatacaacttttaccttctcc 295  Q
    ||||||||||||||||| ||||    ||||   ||||||||||| ||||||||||||||  ||| |||||||||| ||||||||||| |||||    
T  124001 ttcaacaccattcaacatccactttttcaatttccaacactccacatcattttttctct--tattcaacactcattcaacttttaccatctcc 124091  T

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