View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17637_low_2 (Length: 610)
Name: NF17637_low_2
Description: NF17637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17637_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 60 - 600
Target Start/End: Original strand, 17049718 - 17050258
Alignment:
| Q |
60 |
tgacaattgtacaaatcaatgtaactcgtaactcgctggattatcagtagtacatgacaaagtaagaatctttcaacttctcaaacttcctaatgaaatc |
159 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17049718 |
tgacaattgtacaaatcaatgtaactcgtaactcgctggattatcagtagtacatgacaaagtaagaatctttcaacttctcaaacttcctaatgaaatc |
17049817 |
T |
|
| Q |
160 |
ctccgcaaaccttcgatattcatattatcatcaccctttatttctatcatatctaaannnnnnncttccaattcctctattattatggaagctcgcagaa |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
17049818 |
ctccgcaaaccttcgatattcatattatcatcaccctttatttctatcatatctaaatttttttcttccaattcctctattattatggaagctcgcagga |
17049917 |
T |
|
| Q |
260 |
attttatgcgaagaaagggacaccnnnnnnnttgtggtgaagtgctaaagttctgggaattaagaagacaaaggtacaaaagttcattgcagttctaata |
359 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17049918 |
attttatgcgaagaaagggacaccaaaaaaattgtggtgaagtgctaaagttctgggaattaagaagacaaaggtacaaaagttcattgcagttctaata |
17050017 |
T |
|
| Q |
360 |
cagatttccatgaaacttctcaagaggtctccttggctgcacaagacatcaaatattttttctaaatagataattgctttgtggttttaaatatgtgagt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17050018 |
cagatttccatgaaacttctcaagaggtctccttggctgcacaagacatcaaatattttttctaaatagataattgctttgtggttttaaatatgtgagt |
17050117 |
T |
|
| Q |
460 |
attttcttggtaaaatatttcacagattaataacaatccttaatgtacaagaaattgattgtgcccttggaatcttgtttcaagtatattattttccaac |
559 |
Q |
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| T |
17050118 |
attttcttggtaaaatatttcacagattaataacaatccttaatgtacaagaaattgattgtgcccttggaatcttgtttcaagtatattattttccaac |
17050217 |
T |
|
| Q |
560 |
aatcttgagagttgatctcttcttctaatcatagattcatc |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
17050218 |
aatcttgagagttgatctcttcttctaatcatagattcatc |
17050258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 60 - 600
Target Start/End: Original strand, 16979507 - 16980047
Alignment:
| Q |
60 |
tgacaattgtacaaatcaatgtaactcgtaactcgctggattatcagtagtacatgacaaagtaagaatctttcaacttctcaaacttcctaatgaaatc |
159 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16979507 |
tgacaattgtacaaatcaatgtaactcgtaactcgctggattatcagtagtacatgacaaagtaagaatctttcaacttctcaaacttcctaatgaaatc |
16979606 |
T |
|
| Q |
160 |
ctccgcaaaccttcgatattcatattatcatcaccctttatttctatcatatctaaannnnnnncttccaattcctctattattatggaagctcgcagaa |
259 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
16979607 |
ctccgcaaacctttcatattcatattatcatcaccctttatttctatcatatctaaatttttttcttccaattcctctattattatggaagctcgcagga |
16979706 |
T |
|
| Q |
260 |
attttatgcgaagaaagggacaccnnnnnnnttgtggtgaagtgctaaagttctgggaattaagaagacaaaggtacaaaagttcattgcagttctaata |
359 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16979707 |
attttatgcgaagaaagggacaccaaaaaaatggtggtgaagtgctaaagttctgggaattaagaagacaaaggtacaaaagttcattgcagttctaata |
16979806 |
T |
|
| Q |
360 |
cagatttccatgaaacttctcaagaggtctccttggctgcacaagacatcaaatattttttctaaatagataattgctttgtggttttaaatatgtgagt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16979807 |
cagatttccatgaaacttctcaagaggtctccttggctgcacaagacatcaaatattttttctaaatagataattgctttgtggttttaaatatgtgagt |
16979906 |
T |
|
| Q |
460 |
attttcttggtaaaatatttcacagattaataacaatccttaatgtacaagaaattgattgtgcccttggaatcttgtttcaagtatattattttccaac |
559 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16979907 |
attttcttggtaaaatatttcacagattaataacaatccttaatgtacaagaaattgattgtgcccttggaatcttgtttcaagtatattattttccaac |
16980006 |
T |
|
| Q |
560 |
aatcttgagagttgatctcttcttctaatcatagattcatc |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
16980007 |
aatcttgagagttgatctcttcttctaatcatagattcatc |
16980047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 60 - 600
Target Start/End: Original strand, 17031379 - 17031919
Alignment:
| Q |
60 |
tgacaattgtacaaatcaatgtaactcgtaactcgctggattatcagtagtacatgacaaagtaagaatctttcaacttctcaaacttcctaatgaaatc |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17031379 |
tgacaattgtacaaatcaatgtaactcgtaactcgctggattatcagtagtacatgacaaagtaagaatctttcaacttctcaaacttcctaatgaaatc |
17031478 |
T |
|
| Q |
160 |
ctccgcaaaccttcgatattcatattatcatcaccctttatttctatcatatctaaannnnnnncttccaattcctctattattatggaagctcgcagaa |
259 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
17031479 |
ctccgcaaacctttcatattcatattatcatcaccctttatttctatcatatctaaatttttttcttccaattcctctattattatggaagctcgcagga |
17031578 |
T |
|
| Q |
260 |
attttatgcgaagaaagggacaccnnnnnnnttgtggtgaagtgctaaagttctgggaattaagaagacaaaggtacaaaagttcattgcagttctaata |
359 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17031579 |
attttatgcgaagaaagggacaccaaaaaaatggtggtgaagtgctaaagttctgggaattaagaagacaaaggtacaaaagttcattgcagttctaata |
17031678 |
T |
|
| Q |
360 |
cagatttccatgaaacttctcaagaggtctccttggctgcacaagacatcaaatattttttctaaatagataattgctttgtggttttaaatatgtgagt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17031679 |
cagatttccatgaaacttctcaagaggtctccttggctgcacaagacatcaaatattttttctaaatagataattgctttgtggttttaaatatgtgagt |
17031778 |
T |
|
| Q |
460 |
attttcttggtaaaatatttcacagattaataacaatccttaatgtacaagaaattgattgtgcccttggaatcttgtttcaagtatattattttccaac |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17031779 |
attttcttggtaaaatatttcacagattaataacaatccttaatgtacaagaaattgattgtgcccttggaatcttgtttcaagtatattattttccaac |
17031878 |
T |
|
| Q |
560 |
aatcttgagagttgatctcttcttctaatcatagattcatc |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
17031879 |
aatcttgagagttgatctcttcttctaatcatagattcatc |
17031919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 16979430 - 16979485
Alignment:
| Q |
18 |
gttggcgcatcaagtttccataacgaaaatgactcgtttgattgacaattgtacaa |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16979430 |
gttggcgcatcaagtttccataacgaaaatgactcgtttgattgacaattgtacaa |
16979485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 17031302 - 17031357
Alignment:
| Q |
18 |
gttggcgcatcaagtttccataacgaaaatgactcgtttgattgacaattgtacaa |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17031302 |
gttggcgcatcaagtttccataacgaaaatgactcgtttgattgacaattgtacaa |
17031357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 17049641 - 17049696
Alignment:
| Q |
18 |
gttggcgcatcaagtttccataacgaaaatgactcgtttgattgacaattgtacaa |
73 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17049641 |
gttggcgcatcaagtttccataacgaaaatgactcgtttgattgacaattgtacaa |
17049696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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