View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17637_low_3 (Length: 533)
Name: NF17637_low_3
Description: NF17637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17637_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 25487100 - 25486967
Alignment:
| Q |
1 |
ctcaacttgttgaatttgctcacgtcctccttttgatttagaattatggccttagcttttattgcttcctgaaaatttaagaataacaatattatgaaat |
100 |
Q |
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| T |
25487100 |
ctcaacttgttgaatttgctcacatcctccttttgatttagaattatggccttagcttttattgcttcctgaaaatttaagaacaacaatattaggaaat |
25487001 |
T |
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| Q |
101 |
gaaataacgaaatcaatgatttgttacggaaaac |
134 |
Q |
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| T |
25487000 |
aaaataacgaaatcaatgaattgctacggaaaac |
25486967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 421 - 533
Target Start/End: Complemental strand, 25486264 - 25486151
Alignment:
| Q |
421 |
gcaaaatatggaaatggaaaattatggaatttgattaggt-ggatatattaccgaatttgtaatcatggcatgatggaaatcacggtaaagccacattct |
519 |
Q |
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|||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25486264 |
gcaaaatatgaaaatggaaaatcatggaatttgattagattggatatattaccgaatttgtaatcatggcatgatggaaatcacggtaaagccacattct |
25486165 |
T |
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| Q |
520 |
actccataattttg |
533 |
Q |
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| T |
25486164 |
actccatagttttg |
25486151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 461 - 533
Target Start/End: Original strand, 25434663 - 25434735
Alignment:
| Q |
461 |
ggatatattaccgaatttgtaatcatggcatgatggaaatcacggtaaagccacattctactccataattttg |
533 |
Q |
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| T |
25434663 |
ggatatattaccgaatttgtaatcatggcatgatggaaatcacggtaaagccacattctactccatgattttg |
25434735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 25433664 - 25433771
Alignment:
| Q |
1 |
ctcaacttgttgaatttgctcacgtcctccttttgatttagaattatggccttagcttttattgcttcctgaaaatttaagaataacaatattatgaaat |
100 |
Q |
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| T |
25433664 |
ctcaacttgttgaatttgctaacatcctcctttttatttaaaattatggttttagcttttattgcttcctgaaaaattgagaataaacatattataaaat |
25433763 |
T |
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| Q |
101 |
gaaataac |
108 |
Q |
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| T |
25433764 |
ggaataac |
25433771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 25477007 - 25477077
Alignment:
| Q |
10 |
ttgaatttgctcacgtcctccttttgatttagaattatggccttagcttttattgcttcctgaaaatttaa |
80 |
Q |
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| T |
25477007 |
ttgaatttgctgacttcctccttttgatttagaattatggctttagcttttattccttcctgaaaaattaa |
25477077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 467 - 528
Target Start/End: Complemental strand, 25447281 - 25447220
Alignment:
| Q |
467 |
attaccgaatttgtaatcatggcatgatggaaatcacggtaaagccacattctactccataa |
528 |
Q |
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| T |
25447281 |
attaccgaatttgaaatcatcgcatcatggaaatcacggtaaagccacattctgctccataa |
25447220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 25447841 - 25447762
Alignment:
| Q |
1 |
ctcaacttgttgaatttgctcacgtcctccttttgatttagaattatggccttagcttttattgcttcctgaaaatttaa |
80 |
Q |
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||||||| ||||||||||| || || ||||||||||||| ||||||||| |||||||||| ||||||||| |||||||| |
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| T |
25447841 |
ctcaactgattgaatttgcttacatcatccttttgatttataattatggctttagcttttactgcttcctggaaatttaa |
25447762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 25639970 - 25639900
Alignment:
| Q |
25 |
tcctccttttgatttagaattatggccttagcttttattgcttcctgaaaatttaagaataacaatattat |
95 |
Q |
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| T |
25639970 |
tcctctttttgatttagaactatggctttagcttctattgctttctgaaaatttaagaataagcatattat |
25639900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 400
Target Start/End: Original strand, 25434561 - 25434595
Alignment:
| Q |
366 |
tcataccatgttggtgctgtgttgtcctttacctt |
400 |
Q |
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| T |
25434561 |
tcataccatgttggtgatgtgttgtcctttacctt |
25434595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 489 - 525
Target Start/End: Complemental strand, 25639315 - 25639279
Alignment:
| Q |
489 |
catgatggaaatcacggtaaagccacattctactcca |
525 |
Q |
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| T |
25639315 |
catgatggaaatcccggtaaagccacaatctactcca |
25639279 |
T |
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