View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17637_low_5 (Length: 393)

Name: NF17637_low_5
Description: NF17637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17637_low_5
NF17637_low_5
[»] chr7 (11 HSPs)
chr7 (17-389)||(29578412-29578784)
chr7 (17-389)||(29582581-29582953)
chr7 (70-331)||(8609029-8609290)
chr7 (70-251)||(8601083-8601264)
chr7 (90-329)||(7878530-7878769)
chr7 (76-335)||(8580815-8581074)
chr7 (70-329)||(8383676-8383935)
chr7 (82-329)||(8589762-8590009)
chr7 (38-330)||(8544713-8545005)
chr7 (111-214)||(8569464-8569567)
chr7 (90-230)||(8575431-8575571)
[»] chr8 (1 HSPs)
chr8 (52-331)||(12527598-12527877)


Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 29578784 - 29578412
Alignment:
Q  17 aactctttccattcataatcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgta 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578784 aactctttccattcataatcgcagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgta 29578685  T
Q  117 aagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578684 aagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttct 29578585  T
Q  217 tgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578584 tgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcga 29578485  T
Q  317 tagcaaaacatactttgatgcaaaggccacggggagcaggaggaacaaagagacgaaacaaacccaacaagtt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578484 tagcaaaacatactttgatgcaaaggccacggggagcaggaggaacaaagagacgaaacaaacccaacaagtt 29578412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 29582953 - 29582581
Alignment:
Q  17 aactctttccattcataatcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgta 116  Q
    |||| ||||| ||||||||  |||||| ||||||  ||||||||||||||| || ||||||||||||  ||||||||||||||||||||||| |||||||    
T  29582953 aactttttccgttcataattgcagaattgatctttgttttgtctgcaggagtcaccatggaactaacgttgttatcctccattactttactcattttgta 29582854  T
Q  117 aagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttct 216  Q
    |||||| || ||||||||||| |  ||||||||| ||  ||| ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||||||    
T  29582853 aagatagtcgtccaaagcattcattgctctagctctcatttggaacttcagatcttcaaccttgaaattctctgcttcttggatcattctctcaatttct 29582754  T
Q  217 tgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcga 316  Q
    | |||||| | ||||| |||  ||||||||||||| |||||  | ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |    
T  29582753 tcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggtttcttcctcagcagtgacatttagtataccatctgcatcta 29582654  T
Q  317 tagcaaaacatactttgatgcaaaggccacggggagcaggaggaacaaagagacgaaacaaacccaacaagtt 389  Q
    ||||||| ||||||||||| | |||||| || |||||| ||||||  ||||||| ||||||||||| ||||||    
T  29582653 tagcaaagcatactttgatacgaaggccgcgaggagcacgaggaattaagagactaaacaaacccagcaagtt 29582581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 331
Target Start/End: Original strand, 8609029 - 8609290
Alignment:
Q  70 agcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatat 169  Q
    ||||||||| |||||||   ||||| ||||||||| | | | |||||||| ||||| |||||| |||| |  ||| || |||||| || ||||||||  |    
T  8609029 agcatggaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagt 8609128  T
Q  170 cttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttcc 269  Q
    ||||  | ||||| |||||||||||||| ||||||| ||||||||||| |||||||||||  | ||| || |||||||| || || ||  ||||||| ||    
T  8609129 cttcctctttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattacc 8609228  T
Q  270 agttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactt 331  Q
    | | ||||||||||| |||| |||||||||||||||||| ||||| |||||||| |||||||    
T  8609229 actggtttcttcctctgcagagacatttaatataccatcagcatctatagcaaagcatactt 8609290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 251
Target Start/End: Original strand, 8601083 - 8601264
Alignment:
Q  70 agcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttct-cttgaaacttcata 168  Q
    ||||||||||||||||| | ||||| ||||||||| ||| |  ||||||||||||| |||| | |||| |  ||| || |||||| |||||| ||||||     
T  8601083 agcatggaactaacactatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaa-cttcatg 8601181  T
Q  169 tcttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgt 251  Q
    |||||| | ||||| |||||||||||||||||||||| |||||||||||  ||||| |||||||  || ||||| ||||||||    
T  8601182 tcttcatctttgaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgt 8601264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 329
Target Start/End: Complemental strand, 7878769 - 7878530
Alignment:
Q  90 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 189  Q
    ||||| ||||||||| ||| || | ||||  ||||| ||||||||||| || |||||| | |||||   ||||||||| ||||||  |||||| | ||||    
T  7878769 atccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactca 7878670  T
Q  190 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcag 289  Q
    |||||||  ||| ||| |||||||||||   |||| ||||||| ||| ||||| || ||||| || ||  |||| || ||| ||||||||||||  || |    
T  7878669 gcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgg 7878570  T
Q  290 tgacatttaatataccatctgcatcgatagcaaaacatac 329  Q
     |||||||||||||||||| ||||| ||| ||||||||||    
T  7878569 agacatttaatataccatcagcatctatatcaaaacatac 7878530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 335
Target Start/End: Original strand, 8580815 - 8581074
Alignment:
Q  76 gaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttc-tcttgaaacttcatatcttca 174  Q
    ||||||||||  ||||||||||||||||| |||  ||||||||||||||| |||||||||||||  ||| || ||||| ||||| |||| ||| |||| |    
T  8580815 gaactaacacaattatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttg-aactccatgtcttga 8580913  T
Q  175 accttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttg 274  Q
     |||| ||  | ||||||| |   ||||||  ||||||||| |   |||||||||||| ||| ||||| |||||||| ||  |  ||||| |  || |||    
T  8580914 gccttaaaaatttcagcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttcttactagcatttg 8581013  T
Q  275 tttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactttgat 335  Q
    |||||||||| |||| |||||||||||||||||| | ||| |||| ||| ||| |||||||    
T  8581014 tttcttcctctgcagagacatttaatataccatcagaatctatagaaaagcattctttgat 8581074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 329
Target Start/End: Complemental strand, 8383935 - 8383676
Alignment:
Q  70 agcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatat 169  Q
    ||||| ||| ||||||| | ||| | ||||||||| ||| | |||||||||||||| ||||||||||| |  ||| || ||||||    ||||||||| |    
T  8383935 agcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcatgt 8383836  T
Q  170 cttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttcc 269  Q
    ||||| ||||||| ||||| || ||||||||||||| ||||||||| | |||||| |  |||| ||| |||||  ||||||| || ||   |||||| ||    
T  8383835 cttcagccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattccc 8383736  T
Q  270 agttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatac 329  Q
    |   || ||||| | ||||| ||||||||||||||||||  |||| | || |||||||||    
T  8383735 acaggtatcttctttagcagagacatttaatataccatcaacatctacagaaaaacatac 8383676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 329
Target Start/End: Original strand, 8589762 - 8590009
Alignment:
Q  82 acactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttga 181  Q
    ||||||| ||||| ||||||||| ||| | | |||||||||||| || |||||||| |  |||||| ||||||    |  |||||| |||||| ||||||    
T  8589762 acactgtcatccttcattactttcctcatgtcgtaaagataatcatctaaagcattcattgctctaactttcttcacatgcttcatgtcttcagccttga 8589861  T
Q  182 atttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttc 281  Q
    | | ||||||||| |||||||||| |||||||||||   |||  ||||||| ||| ||||| |||||||| || |   | ||||| ||| |  |||||||    
T  8589862 agtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatattttttttattaccactgctttcttc 8589961  T
Q  282 ctcagcagtgacatttaatataccatctgcatcgatagcaaaacatac 329  Q
    ||||||||  || |||||||||||||| ||||| |||| ||| |||||    
T  8589962 ctcagcagacacgtttaatataccatcagcatctatagaaaagcatac 8590009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 330
Target Start/End: Original strand, 8544713 - 8545005
Alignment:
Q  38 cagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatt 137  Q
    |||||| ||| |||||||||||| |||| || ||| ||||| ||||||  | ||||| ||||||||| |||   |||||||||||||  |||||||||||    
T  8544713 cagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactttcctcacattgtaaagataatactccaaagcatt 8544812  T
Q  138 taccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctatta 237  Q
    |   |||  | |||| | |   |||||||| |||| | ||||||| || |||||||| |||||||||| |||||||||||   |||| | ||||| |||     
T  8544813 tcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtcagcttcctggatcattctctcaatttcttcccttgataatcttccattt 8544912  T
Q  238 tcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatact 330  Q
    ||| | |||||||| || ||| ||||| | ||| | ||||||||    |||| ||| ||||||| |||||  ||||| |||||||| ||||||    
T  8544913 tcaatagttattgtaatttcattcttactaccactggtttcttctgttgcagagacgtttaataaaccattagcatctatagcaaagcatact 8545005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 8569464 - 8569567
Alignment:
Q  111 tttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctca 210  Q
    ||||||||||||||| ||||||||||||   |||  | |||||| ||  |||||||| |||| | ||||||| ||||||||||| |||||||||| ||||    
T  8569464 tttgtaaagataatcatccaaagcatttcttgcttcaactttctttttgaacttcatgtcttgagccttgaaattctcagcttcctggatcattctctca 8569563  T
Q  211 attt 214  Q
    ||||    
T  8569564 attt 8569567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 8575431 - 8575571
Alignment:
Q  90 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttct-cttgaaacttcatatcttcaaccttgaatttctc 188  Q
    ||||| ||||| ||| ||||  |||| ||||||||| ||||| |||||||  ||| || |||||| |||||| || ||| |||| | |||||||  | ||    
T  8575431 atccttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttgaa-ctccatgtcttgagccttgaaaatttc 8575529  T
Q  189 agcttcttggatcattcgctcaatttcttgagttgaaagtct 230  Q
    ||||||||| ||||||| | ||||||||||||| || |||||    
T  8575530 agcttcttgaatcattctcgcaatttcttgagtcgatagtct 8575571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 331
Target Start/End: Original strand, 12527598 - 12527877
Alignment:
Q  52 attttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctt 151  Q
    ||||||||| |||| | |||||||||||||||||  ||||||| ||| | ||| |||   | ||||||||| || ||||||||||| |  ||| || |||    
T  12527598 attttgtctacaggtgtcagcatggaactaacacaattatccttcatgattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactt 12527697  T
Q  152 tctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgt 251  Q
    ||| ||  ||||||||||||||| ||||||| ||||||||||| |||||||||| | ||||||||| | |||| | ||||| ||| ||||||||||||||    
T  12527698 tctttttgaacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgataatcttccattttcatttgttattgt 12527797  T
Q  252 gatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactt 331  Q
     || ||  ||||||| ||| | |||| |||||  |||| ||| ||||||||||| || ||||| |||||||| |||||||    
T  12527798 aatatctttcttattaccactggttttttccttcgcagagacttttaatataccgtcagcatctatagcaaagcatactt 12527877  T

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