View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17637_low_7 (Length: 354)
Name: NF17637_low_7
Description: NF17637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17637_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 13932342 - 13932682
Alignment:
| Q |
15 |
aatatataagaattaaaactaaaatgacacaaacaatccaccactcaataaacttttgtggcaattg--------------acttatagtctactctcgt |
100 |
Q |
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| T |
13932342 |
aatatataagaattaaaactaaaatgacacaaacaatccaccactcaataaacttttgtggcaattatagaatttattacaacttatagtctactcgcgt |
13932441 |
T |
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| Q |
101 |
tgcattttcttctacgctgcatttattttcaaactgatttctgtagctattcttactttggtgaactaagttatggcgactattgtggtagaagcacttc |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13932442 |
tgcattttcttctacgctgcatttatcttcaaactgatttctgcagctattcttactttggagaactaagttatggcgactattgtggtagaagcacttc |
13932541 |
T |
|
| Q |
201 |
tttcagcttctttggagctgttgttgnnnnnnnttgttgctgaagatttcgtggatttcattcggagtaccaaacttgatgttgcactgttggaaaagct |
300 |
Q |
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| T |
13932542 |
tttcagcttctttggagctgttgttgaaaaaaattgttgctgaagatttcgtggatttcattcggagtaccaaacttgatgttgcactgttggaaaagct |
13932641 |
T |
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| Q |
301 |
gaacgttacactgctgagtctacaagctgtacttcatgatg |
341 |
Q |
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| T |
13932642 |
gaacgtaacactgctgagtctacaagctgtacttcatgatg |
13932682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 82 - 341
Target Start/End: Complemental strand, 4061604 - 4061344
Alignment:
| Q |
82 |
acttatagtctactctcgttgcattttcttctacgctgcatttattttcaaactgatttctgtagctattcttactttggtgaa-ctaagttatggcgac |
180 |
Q |
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| T |
4061604 |
acttatagtctactcgcgttacattttcttctacgctacttttattttcaaactgatttctgtacctattcttactttggtgaaactaagttatggcgac |
4061505 |
T |
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| Q |
181 |
tattgtggtagaagcacttctttcagcttctttggagctgttgttgnnnnnnnttgttgctgaagatttcgtggatttcattcggagtaccaaacttgat |
280 |
Q |
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| T |
4061504 |
tattgtggtagaagcacttctttcagctactttggatctgttgttgaaaaaaattgttgctgaagatttcgtggatttcattcggagtaccaaacttgat |
4061405 |
T |
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| Q |
281 |
gttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatg |
341 |
Q |
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| T |
4061404 |
gttgcactgttggaaaagctgaacgtaacactgctgagtctgcaagctgtacttcatgatg |
4061344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 341
Target Start/End: Original strand, 4129085 - 4129255
Alignment:
| Q |
171 |
ttatggcgactattgtggtagaagcacttctttcagcttctttggagctgttgttgnnnnnnnttgttgctgaagatttcgtggatttcattcggagtac |
270 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||| ||||| || ||||| ||| || ||||| ||||| ||||||| || |
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| T |
4129085 |
ttatggcgactattgtgggagaagcacttcttgcagcttctttggaagtgttgatggaaaagattgtttctggtgagttcgttgatttatttcggagcac |
4129184 |
T |
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| Q |
271 |
caaacttgatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatg |
341 |
Q |
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||| ||||| |||||||| |||||||||||||| | ||| || ||||||| ||||||||||||||||||| |
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| T |
4129185 |
caagcttgacgttgcacttttggaaaagctgaagataacaatgttgagtcttcaagctgtacttcatgatg |
4129255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 341
Target Start/End: Original strand, 4140796 - 4140956
Alignment:
| Q |
181 |
tattgtggtagaagcacttctttcagcttctttggagctgttgttgnnnnnnnttgttgctgaagatttcgtggatttcattcggagtaccaaacttgat |
280 |
Q |
| |
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|||||| ||||||||||| ||| |||||||||| ||| |||||||| ||||| ||| || || ||||| ||| ||||||| |||||||| ||| |
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| T |
4140796 |
tattgttgtagaagcactccttgcagcttcttttgaggtgttgttggaaaagattgtttctggtgactttgtggacttctttcggagcaccaaactcgat |
4140895 |
T |
|
| Q |
281 |
gttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatg |
341 |
Q |
| |
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|| |||| ||| |||||| ||| | |||||||||||||| ||||||||||||||||||| |
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| T |
4140896 |
ctttcactcttgaaaaagcagaagataacactgctgagtcttcaagctgtacttcatgatg |
4140956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 147 - 333
Target Start/End: Complemental strand, 4116011 - 4115827
Alignment:
| Q |
147 |
ctattcttactttggtgaactaagttatggcgactattgtggtagaagcacttctttcagcttctttggagctgttgttgnnnnnnnttgttgctgaaga |
246 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||| || | || |||||| | ||| || || |
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| T |
4116011 |
ctattcttactt--gtgaactaagttatggcaactgttgtgggagaagcacttctttcagcttctgtgaaactattgttgcaaaagatggtttctagtga |
4115914 |
T |
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| Q |
247 |
tttcgtggatttcattcggagtaccaaacttgatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtact |
333 |
Q |
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||| | || ||| || |||| | || ||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
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| T |
4115913 |
attcattgacttcttttggagcatgaagcttgacgttgcactgttggaaaagctgaagataacactgctgagtcttcaagctgtact |
4115827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 333
Target Start/End: Complemental strand, 4081122 - 4080960
Alignment:
| Q |
171 |
ttatggcgactattgtggtagaagcacttctttcagcttctttggagctgttgttgnnnnnnnttgttgctgaagatttcgtggatttcattcggagtac |
270 |
Q |
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|||||||||||||||||| ||||||| ||||| | || |||||| || | |||||| ||||| ||| || |||| ||||| |||||||||| |
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| T |
4081122 |
ttatggcgactattgtgggagaagcatttcttacggcatctttgaaggtattgttgcaaaagattgtttctggtgagttcgctgatttatttcggagtac |
4081023 |
T |
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| Q |
271 |
caaacttgatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtact |
333 |
Q |
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||| ||||| ||| |||| ||||||||||||||| | |||||| ||||||| ||||||||||| |
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| T |
4081022 |
caagcttgacgttccacttttggaaaagctgaacataacactgatgagtctgcaagctgtact |
4080960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 4093255 - 4093205
Alignment:
| Q |
161 |
gtgaactaagttatggcgactattgtggtagaagcacttctttcagcttct |
211 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
4093255 |
gtgaactaagttatggcgactattgtgggagaagggattctttcagcttct |
4093205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 4123689 - 4123743
Alignment:
| Q |
287 |
ctgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatg |
341 |
Q |
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||||||||||||||||| | |||||||||||||| ||||||||||| ||||||| |
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| T |
4123689 |
ctgttggaaaagctgaaaataacactgctgagtcttcaagctgtactacatgatg |
4123743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 4066909 - 4066869
Alignment:
| Q |
40 |
gacacaaacaatccaccactcaataaacttttgtggcaatt |
80 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||| |
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| T |
4066909 |
gacacaaacaatcaacgactcaataaacttttgtggcaatt |
4066869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 4067093 - 4067061
Alignment:
| Q |
15 |
aatatataagaattaaaactaaaatgacacaaa |
47 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
4067093 |
aatatataagaattaaaactaaaatgactcaaa |
4067061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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