View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_high_13 (Length: 365)
Name: NF17638_high_13
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 46212107 - 46211772
Alignment:
| Q |
14 |
gaacataatattacaactaaggacaacaaattcttaaatggatttatttatttagtccttcctgcattgcatgtaaacaaatctctgatgaagggtcccc |
113 |
Q |
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| T |
46212107 |
gaacataatattacaactaaggacaacaaattcttaaatggatttatttatttaggccttcctgcattgcatgtaaacaaatctctgatgaagggtcccc |
46212008 |
T |
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| Q |
114 |
acattcacagaatgcatgtaataaatctgagcaccgctgagttaatttggattccccaagtgccaagtggtcaattattcctccacctactcaattattt |
213 |
Q |
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| T |
46212007 |
acattcacagaatgcatgtaataaatctgagcaccgctgagttaatttggattccccaagtgccaagtggtcaattattcctccacctactcaattattt |
46211908 |
T |
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| Q |
214 |
gtgttgaacttgcactatactcatcnnnnnnnncactatgcatagtgtaatcttccattgaaatttttcatatacatttactgtgatatgattgtatgat |
313 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46211907 |
gtgttgaacttgcactatactcatcttttttttcactatgcatagtgtaatcttccattgaaatttttcatatacatttactgtgatatgattgtatgat |
46211808 |
T |
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| Q |
314 |
actgagatatgctaactaaatatttaaaatgttact |
349 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
46211807 |
actgagatatgctaactaaatatttaaaatgttact |
46211772 |
T |
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