View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17638_high_18 (Length: 329)

Name: NF17638_high_18

Description: NF17638

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17638_high_18

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 92; E-Value: 1e-44

Query Start/End: Original strand, 176 - 319

Target Start/End: Original strand, 34895682 - 34895819

Alignment:

Q	176	gagagagactcagaatgaaaaggacagggcatagtattattttgggtttatttgcatttgaatgtttgtatagtgaagatcaagatgttacttgtttgtt	275	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	34895682	gagagagactcagaatgaaaaggacagggcatagtattattttgggtttatttgcatttgaatgtttgtatagtg------gagatgttgcttgtttgtt	34895775	T

Q	276	ttggttgcaattatgnnnnnnnacatgagttgcatttgcatatt	319	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34895776	ttggttgcaattatgtttttttacatgagttgcatttgcatatt	34895819	T

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Target: chr3; HSP #2

Raw Score: 75; E-Value: 2e-34

Query Start/End: Original strand, 35 - 113

Target Start/End: Original strand, 34895541 - 34895619

Alignment:

Q	35	attatatatatgatgtctaatatttgattgacacatatcatatgtacattttaaattattccaaaactactaacatgaa	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34895541	attatatatatgctgtctaatatttgattgacacatatcatatgtacattttaaattattccaaaactactaacatgaa	34895619	T

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