View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_high_2 (Length: 687)
Name: NF17638_high_2
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 125 - 360
Target Start/End: Complemental strand, 27538847 - 27538613
Alignment:
| Q |
125 |
tttctttgttatttttcagaagttagttgctcaaattttcagagaagcctaatgaaaagtttaagtagagcacaagtctttgtacccttctttgattatt |
224 |
Q |
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| T |
27538847 |
tttctttgttacttttcagaaattagttgctcaaattttcagagaagcctaatgaaaagtttaagtagagcacaagtctatgtacc---ctttgattatt |
27538751 |
T |
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| Q |
225 |
gttgctcctacaaca--atcacaatgtgatatattgagaggttctagcaacagttgtggtaaaggggcgttcagttgcagtcgtaagataatgtcttctc |
322 |
Q |
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| T |
27538750 |
gtttctcctacagcagccacacaatgtgttatattgagaggttcaagcgacggttatgctaaaggggcattcggtagcaatggtatggtaatgtattctc |
27538651 |
T |
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| Q |
323 |
accaaggtactttgctaatgcaatcaattgtcctatgt |
360 |
Q |
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| T |
27538650 |
actaaggtactttgctaatacaatcaattgtcctatgt |
27538613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 17726466 - 17726508
Alignment:
| Q |
368 |
ttttggattgcattggagcaacacaagtgtgtctttatcggtt |
410 |
Q |
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| T |
17726466 |
ttttggattgcattggagcaacacaagtgtgtctttatcggtt |
17726508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 427 - 455
Target Start/End: Original strand, 17727012 - 17727040
Alignment:
| Q |
427 |
acaagcgtgttatcaaaattccatctatt |
455 |
Q |
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| T |
17727012 |
acaagcgtgttatcaaaattccatctatt |
17727040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 1098565 - 1098623
Alignment:
| Q |
129 |
tttgttatttttcagaagttagttgctcaaattttca-gagaagcctaatgaaaagttt |
186 |
Q |
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| T |
1098565 |
tttgttacttttcaaaagttagttgctcaaattatcaggggaagcgtaatgaaaagttt |
1098623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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