View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_high_20 (Length: 311)
Name: NF17638_high_20
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 50033260 - 50033114
Alignment:
| Q |
16 |
ataatactttatgtattttaaaatgaagtataatttaaggtttttatacatatattaaaatatgcattgattaaaagtaagataattgttaattattagt |
115 |
Q |
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| T |
50033260 |
ataatactttatgtattttaaaatgaagtataatttaaggtttttatacatatattaaaatatgcattgattaaaagtaagataatcgttaattattagt |
50033161 |
T |
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| Q |
116 |
ttgtttttcactgaagtaaaagtaatactttgaggatagtatgtggt |
162 |
Q |
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| T |
50033160 |
ttattttttactgaagtaaaagtaatactttgaggatagtatgtggt |
50033114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 50033054 - 50032977
Alignment:
| Q |
222 |
gagattcacttttgaaacaatattttttattaaagtgacacttattttaaaataaagaaaataatggagtgtgcttac |
299 |
Q |
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| T |
50033054 |
gagattcacttttgaaacaatatttttcattaaagtgacacttattttaaaataaagaaaataatggagtgtgcttac |
50032977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 47823356 - 47823404
Alignment:
| Q |
49 |
tttaaggtttttatacatatattaaaatatgcattgattaaaagtaaga |
97 |
Q |
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| T |
47823356 |
tttaaggtttttatacacatattaaaaaatgtattaattaaaagaaaga |
47823404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 30312747 - 30312690
Alignment:
| Q |
49 |
tttaaggtttttatacatatattaaaatatgcattgattaaaagtaagataattgtta |
106 |
Q |
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| T |
30312747 |
tttaaggtttttacacatatattaaaaaatgcattaattaaaagaaagataaatgtta |
30312690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 34012670 - 34012612
Alignment:
| Q |
48 |
atttaaggtttttatacatatattaaaatatgcattgattaaaagtaagataattgtta |
106 |
Q |
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| T |
34012670 |
atttaaggtttttacacatatattaagaaatccattaattaaaagaaagataaatgtta |
34012612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 47187864 - 47187807
Alignment:
| Q |
49 |
tttaaggtttttatacatatattaaaatatgcattgattaaaagtaagataattgtta |
106 |
Q |
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| T |
47187864 |
tttaaggtttttacatgcatattaaaaaatgcattgattaaaagaaagagaattgtta |
47187807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 44557008 - 44557065
Alignment:
| Q |
49 |
tttaaggtttttatacatatattaaaatatgcattgattaaaagtaagataattgtta |
106 |
Q |
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| T |
44557008 |
tttaaggtttttatacacatattaaaaaatgcattaattaaaagaaagagaaatgtta |
44557065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 39125805 - 39125748
Alignment:
| Q |
49 |
tttaaggtttttatacatatattaaaatatgcattgattaaaagtaagataattgtta |
106 |
Q |
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||||||||||||| ||| ||||||| | ||||| |||||||||| |||| |||||||| |
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| T |
39125805 |
tttaaggtttttacacacatattaagaaatgcaatgattaaaagaaagagaattgtta |
39125748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 42329690 - 42329732
Alignment:
| Q |
231 |
ttttgaaacaatattttttattaaagtgacacttattttaaaa |
273 |
Q |
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| T |
42329690 |
ttttgaaacaattttttttaataaagtgacactcattttaaaa |
42329732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 7731737 - 7731781
Alignment:
| Q |
231 |
ttttgaaacaatattttttattaaagtgacacttattttaaaata |
275 |
Q |
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|||| ||||||| ||||| | |||||||||||||||||||||||| |
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| T |
7731737 |
ttttaaaacaatttttttgactaaagtgacacttattttaaaata |
7731781 |
T |
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