View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_high_3 (Length: 647)
Name: NF17638_high_3
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_high_3 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 190 - 647
Target Start/End: Original strand, 11555958 - 11556415
Alignment:
| Q |
190 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
289 |
Q |
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| T |
11555958 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
11556057 |
T |
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| Q |
290 |
acattccaacaccttgtatgaggatttaatcgagacagcaataaaacacgataaactcctacaacaccaaaccgaaacacaacccttagttggggaccaa |
389 |
Q |
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| T |
11556058 |
actttccaacaccttgtatgacgatttaatcgagacagcaataaaacacgacaaactcctacaacaccaaaccgaaacacaacccttagttggggatcaa |
11556157 |
T |
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| Q |
390 |
acaccaaaatcaacagtaacacaaactaacatcgttggacatgctttcaaaaataatctcattttttgacttccacataacctaaataatagctgccaaa |
489 |
Q |
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| T |
11556158 |
acaccaaaatcaacagtaacacaaactaacatcgttggacatgctttcaaaaataatctcattttttgacttccacataacctaaataatagctgccaaa |
11556257 |
T |
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| Q |
490 |
taatccaatacctacacaatttcctactgcgaaagcagattttattgagtaatttaagcacattagaccacaccttataagaaacttaacaatgtaaaaa |
589 |
Q |
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| T |
11556258 |
taatccaatacctacacaatttcctactgcaaaagcagattttattgagtaatttaagcacattagaccacaccttataagaaacttaacaatgtaaaaa |
11556357 |
T |
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| Q |
590 |
tagattatctttagttggaataagaccatgaagtttctgcccaaccggcacaaaacac |
647 |
Q |
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| T |
11556358 |
tagattatctttagttggaataagaccatgaagtttctgcccaaccggcacaaaacac |
11556415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 190 - 417
Target Start/End: Original strand, 11530461 - 11530688
Alignment:
| Q |
190 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
289 |
Q |
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| T |
11530461 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
11530560 |
T |
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| Q |
290 |
acattccaacaccttgtatgaggatttaatcgagacagcaataaaacacgataaactcctacaacaccaaaccgaaacacaacccttagttggggaccaa |
389 |
Q |
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| T |
11530561 |
actttccaacaccttgtatgaggatttaatcgagacagcaataaaacacgacaaactcctacaacaccaaaccgaaacacaacccttagttggggaccaa |
11530660 |
T |
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| Q |
390 |
acaccaaaatcaacagtaacacaaacta |
417 |
Q |
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| T |
11530661 |
acaccaaaatcaacaataacacaaacta |
11530688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 414 - 647
Target Start/End: Original strand, 11530721 - 11530954
Alignment:
| Q |
414 |
actaacatcgttggacatgctttcaaaaataatctcattttttgacttccacataacctaaataatagctgccaaataatccaatacctacacaatttcc |
513 |
Q |
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| T |
11530721 |
actaacatcgttggacatgctttcaaaaataatctcattttttgacttccacataacctaaataacagctgccaaataatccagtacctacagaatttcc |
11530820 |
T |
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| Q |
514 |
tactgcgaaagcagattttattgagtaatttaagcacattagaccacaccttataagaaacttaacaatgtaaaaatagattatctttagttggaataag |
613 |
Q |
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| T |
11530821 |
tactgcaaaagcagattttattgagtaatttaagcacattagaccacaccttataagaaacttaacaatgtaaaaatagattacctttagttggaataag |
11530920 |
T |
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| Q |
614 |
accatgaagtttctgcccaaccggcacaaaacac |
647 |
Q |
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| T |
11530921 |
accatgaagtttcctcccgaccggcacaaaacac |
11530954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 11555796 - 11555891
Alignment:
| Q |
11 |
gagatgaacaatgaaatttaaatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtaccataatttacagtcacttg |
106 |
Q |
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| T |
11555796 |
gagaagaacaatgaaatttacatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtactataatttacagtcacttg |
11555891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 11530150 - 11530213
Alignment:
| Q |
11 |
gagatgaacaatgaaatttaaatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaa |
74 |
Q |
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| T |
11530150 |
gagaagaacaatgaaatttacatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaa |
11530213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 11556521 - 11556559
Alignment:
| Q |
286 |
acaaacattccaacaccttgtatgaggatttaatcgaga |
324 |
Q |
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| T |
11556521 |
acaaaccttccaacaccttgtatgacgatttaatcgaga |
11556559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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